Literature DB >> 21045310

Expression, purification, crystallization and preliminary crystallographic studies of cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase from Pandoraea pnomenusa B-356.

Dipak N Patil, Shailly Tomar, Michel Sylvestre, Pravindra Kumar.   

Abstract

cis-Biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is involved in the aerobic biodegradation of biphenyl and polychlorinated biphenyls. BphB from Pandoraea pnomenusa strain B-356 was overexpressed in Escherichia coli, purified to homogeneity and crystallized. Crystals were obtained by the sitting-drop vapour-diffusion method using polyethylene glycol 3350 and 0.2 M sodium malonate. A BphB crystal diffracted to 2.8 Å resolution and belonged to space group P4(3)2(1)2, with unit-cell parameters a = b = 75.2, c = 180.4 Å. Preliminary crystallographic analysis indicated the presence of two molecules in the asymmetric unit, giving a Matthews coefficient of 2.2 Å(3) Da(-1) and a solvent content of 44%.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21045310      PMCID: PMC3001663          DOI: 10.1107/S1744309110036894

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  Sequencing of Comamonas testosteroni strain B-356-biphenyl/chlorobiphenyl dioxygenase genes: evolutionary relationships among Gram-negative bacterial biphenyl dioxygenases.

Authors:  M Sylvestre; M Sirois; Y Hurtubise; J Bergeron; D Ahmad; F Shareck; D Barriault; I Guillemette; J M Juteau
Journal:  Gene       Date:  1996-10-03       Impact factor: 3.688

2.  cis-chlorobenzene dihydrodiol dehydrogenase (TcbB) from Pseudomonas sp. strain P51, expressed in Escherichia coli DH5alpha(pTCB149), catalyzes enantioselective dehydrogenase reactions.

Authors:  H Raschke; T Fleischmann; J R Van Der Meer; H P Kohler
Journal:  Appl Environ Microbiol       Date:  1999-12       Impact factor: 4.792

3.  Purification and characterization of an arene cis-dihydrodiol dehydrogenase endowed with broad substrate specificity toward polycyclic aromatic hydrocarbon dihydrodiols.

Authors:  Yves Jouanneau; Christine Meyer
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

4.  Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400.

Authors:  M Seeger; M Zielinski; K N Timmis; B Hofer
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

5.  Purification and properties of cis-toluene dihydrodiol dehydrogenase from Pseudomonas putida.

Authors:  J E Rogers; D T Gibson
Journal:  J Bacteriol       Date:  1977-06       Impact factor: 3.490

6.  Conversion of chlorobiphenyls into phenylhexadienoates and benzoates by the enzymes of the upper pathway for polychlorobiphenyl degradation encoded by the bph locus of Pseudomonas sp. strain LB400.

Authors:  M Seeger; K N Timmis; B Hofer
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792

7.  Crystal structure of cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase from a PCB degrader at 2.0 A resolution.

Authors:  M Hülsmeyer; H J Hecht; K Niefind; B Hofer; L D Eltis; K N Timmis; D Schomburg
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

8.  Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation.

Authors:  F J Mondello
Journal:  J Bacteriol       Date:  1989-03       Impact factor: 3.490

9.  Purification and propeties of (plus)-cis-naphthalene dihydrodiol dehydrogenase of Pseudomonas putida.

Authors:  T R Patel; D T Gibson
Journal:  J Bacteriol       Date:  1974-09       Impact factor: 3.490

10.  Dihydroxylation and dechlorination of chlorinated biphenyls by purified biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400.

Authors:  J D Haddock; J R Horton; D T Gibson
Journal:  J Bacteriol       Date:  1995-01       Impact factor: 3.490

View more
  2 in total

1.  Biochemical studies and ligand-bound structures of biphenyl dehydrogenase from Pandoraea pnomenusa strain B-356 reveal a basis for broad specificity of the enzyme.

Authors:  Sonali Dhindwal; Dipak N Patil; Mahmood Mohammadi; Michel Sylvestre; Shailly Tomar; Pravindra Kumar
Journal:  J Biol Chem       Date:  2011-08-31       Impact factor: 5.157

2.  Dynamic characterization and substrate binding of cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase-an enzyme used in bioremediation.

Authors:  Stefano Piccoli; Francesco Musiani; Alejandro Giorgetti
Journal:  J Mol Model       Date:  2014-11-30       Impact factor: 1.810

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.