Literature DB >> 10427057

Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400.

M Seeger1, M Zielinski, K N Timmis, B Hofer.   

Abstract

Burkholderia sp. strain LB400 is one of the most potent aerobic polychlorobiphenyl (PCB)-degrading microorganisms that have been characterized. Its PCB-dioxygenating activity originates predominantly or exclusively from the biphenyl dioxygenase encoded by its bph gene cluster. Analysis of the dioxygenation products of several di- to pentachlorinated biphenyls formed by this enzyme revealed a complex dependence of the regiospecificity and the yield of dioxygenation on the substitution patterns of both the oxidized and the nonoxidized rings. No dioxygenolytic attack involving chlorinated meta or para carbons was observed. Therefore, the ability of the enzyme to hydroxylate chlorinated carbons appears to be limited to the ortho position. However, it is not limited to monochlorinated rings, as evidenced by dioxygenation of the 2, 4-disubstituted ring at carbons 2 and 3. This site of attack is strikingly different from that of the 2,5-dichlorinated ring, which has been shown to be dihydroxylated at positions 3 and 4 (J. D. Haddock, J. R. Horton, and D. T. Gibson, J. Bacteriol. 177:20-26, 1995). These results demonstrate that a second substituent of ortho-chlorinated rings crucially influences the site of dioxygenation at this ring and thereby determines whether or not the initial chlorobiphenyl oxidation product is further metabolized through the bph-encoded pathway. The 2,4-dichlorinated ring can alternatively be attacked at carbons 5 and 6. The preferred site crucially depends on the substitution pattern of the other ring. The formation of more than a single dioxygenation product was found predominantly with congeners that contain two chlorinated rings, both of which are similarly prone to dioxygenation or one is substituted only at carbon 3.

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Year:  1999        PMID: 10427057      PMCID: PMC91542     

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  24 in total

1.  Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenyls.

Authors:  D L Bedard; R Unterman; L H Bopp; M J Brennan; M L Haberl; C Johnson
Journal:  Appl Environ Microbiol       Date:  1986-04       Impact factor: 4.792

2.  Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenes.

Authors:  K Furukawa; T Miyazaki
Journal:  J Bacteriol       Date:  1986-05       Impact factor: 3.490

3.  Heterologous expression of biphenyl dioxygenase-encoding genes from a gram-positive broad-spectrum polychlorinated biphenyl degrader and characterization of chlorobiphenyl oxidation by the gene products.

Authors:  D B McKay; M Seeger; M Zielinski; B Hofer; K N Timmis
Journal:  J Bacteriol       Date:  1997-03       Impact factor: 3.490

4.  Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system.

Authors:  F W Studier
Journal:  J Mol Biol       Date:  1991-05-05       Impact factor: 5.469

5.  Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

Authors:  K Kimbara; T Hashimoto; M Fukuda; T Koana; M Takagi; M Oishi; K Yano
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

6.  Influence of chroline substitution pattern on the degradation of polychlorinated biphenyls by eight bacterial strains.

Authors:  D L Bedard; M L Haberl
Journal:  Microb Ecol       Date:  1990-12       Impact factor: 4.552

7.  Degradation of chlorobiphenyls catalyzed by the bph-encoded biphenyl-2,3-dioxygenase and biphenyl-2,3-dihydrodiol-2,3-dehydrogenase of Pseudomonas sp. LB400.

Authors:  M Seeger; K N Timmis; B Hofer
Journal:  FEMS Microbiol Lett       Date:  1995-11-15       Impact factor: 2.742

8.  Microbial biodegradation of 4-chlorobiphenyl, a model compound of chlorinated biphenyls.

Authors:  R Massé; F Messier; L Péloquin; C Ayotte; M Sylvestre
Journal:  Appl Environ Microbiol       Date:  1984-05       Impact factor: 4.792

9.  A DNA module encoding bph genes for the degradation of polychlorinated biphenyls (PCBs).

Authors:  D N Dowling; R Pipke; D F Dwyer
Journal:  FEMS Microbiol Lett       Date:  1993-10-15       Impact factor: 2.742

10.  Dihydroxylation and dechlorination of chlorinated biphenyls by purified biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400.

Authors:  J D Haddock; J R Horton; D T Gibson
Journal:  J Bacteriol       Date:  1995-01       Impact factor: 3.490

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  30 in total

1.  Dehalogenation, denitration, dehydroxylation, and angular attack on substituted biphenyls and related compounds by a biphenyl dioxygenase.

Authors:  M Seeger; B Cámara; B Hofer
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

2.  Substrate specificity and expression of three 2,3-dihydroxybiphenyl 1,2-dioxygenases from Rhodococcus globerulus strain P6.

Authors:  David B McKay; Matthias Prucha; Walter Reineke; Kenneth N Timmis; Dietmar H Pieper
Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

3.  Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Authors:  V J Denef; J Park; T V Tsoi; J-M Rouillard; H Zhang; J A Wibbenmeyer; W Verstraete; E Gulari; S A Hashsham; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

4.  Characterization of biphenyl dioxygenase sequences and activities encoded by the metagenomes of highly polychlorobiphenyl-contaminated soils.

Authors:  Christine Standfuss-Gabisch; Djamila Al-Halbouni; Bernd Hofer
Journal:  Appl Environ Microbiol       Date:  2012-02-10       Impact factor: 4.792

5.  Expression, purification, crystallization and preliminary crystallographic studies of cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase from Pandoraea pnomenusa B-356.

Authors:  Dipak N Patil; Shailly Tomar; Michel Sylvestre; Pravindra Kumar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

Review 6.  A decade of Burkholderia cenocepacia virulence determinant research.

Authors:  Slade A Loutet; Miguel A Valvano
Journal:  Infect Immun       Date:  2010-07-19       Impact factor: 3.441

7.  Congener selectivity during polychlorinated biphenyls degradation by Enterobacter sp. LY402.

Authors:  Li Xu; Jin-Jing Xu; Ling-Yun Jia; Wen-Bin Liu; Xie Jian
Journal:  Curr Microbiol       Date:  2010-10-24       Impact factor: 2.188

8.  Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400.

Authors:  V J Denef; M A Patrauchan; C Florizone; J Park; T V Tsoi; W Verstraete; J M Tiedje; L D Eltis
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

9.  Influence of chlorine substituents on rates of oxidation of chlorinated biphenyls by the biphenyl dioxygenase of Burkholderia sp. strain LB400.

Authors:  C M Arnett; J V Parales; J D Haddock
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

10.  Structural Basis of the Enhanced Pollutant-Degrading Capabilities of an Engineered Biphenyl Dioxygenase.

Authors:  Sonali Dhindwal; Leticia Gomez-Gil; David B Neau; Thi Thanh My Pham; Michel Sylvestre; Lindsay D Eltis; Jeffrey T Bolin; Pravindra Kumar
Journal:  J Bacteriol       Date:  2016-04-28       Impact factor: 3.490

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