Literature DB >> 21033823

DNA capture into a nanopore: interplay of diffusion and electrohydrodynamics.

Alexander Y Grosberg1, Yitzhak Rabin.   

Abstract

We present a detailed analysis of the process of voltage driven capture of DNA molecules by nanopores. We show that ionic current generates a nonuniform electric field that acts on both the DNA and on its counterions and that the response of DNA to the electric field is affected by its electroosmotic coupling to the mobile counterions. We calculate the voltage and molecular mass dependence of the radius of capture and of the capture rate in the diffusion limited regime. We argue that electroosmotic flow through the DNA coil is suppressed in the vicinity of the pore and present a tentative estimate of the capture rate in the barrier limited regime.

Mesh:

Substances:

Year:  2010        PMID: 21033823     DOI: 10.1063/1.3495481

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  29 in total

1.  DNA capture and translocation through nanoscale pores-a fine balance of electrophoresis and electroosmosis.

Authors:  Allison Squires; Amit Meller
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

2.  Mechanism of how salt-gradient-induced charges affect the translocation of DNA molecules through a nanopore.

Authors:  Yuhui He; Makusu Tsutsui; Ralph H Scheicher; Chun Fan; Masateru Taniguchi; Tomoji Kawai
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

3.  Pore translocation of knotted DNA rings.

Authors:  Antonio Suma; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-28       Impact factor: 11.205

4.  Computational investigation of DNA detection using graphene nanopores.

Authors:  Chaitanya Sathe; Xueqing Zou; Jean-Pierre Leburton; Klaus Schulten
Journal:  ACS Nano       Date:  2011-10-13       Impact factor: 15.881

5.  High-bandwidth protein analysis using solid-state nanopores.

Authors:  Joseph Larkin; Robert Y Henley; Murugappan Muthukumar; Jacob K Rosenstein; Meni Wanunu
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

Review 6.  Nanopores: A journey towards DNA sequencing.

Authors:  Meni Wanunu
Journal:  Phys Life Rev       Date:  2012-05-18       Impact factor: 11.025

7.  DNA motion induced by electrokinetic flow near an Au coated nanopore surface as voltage controlled gate.

Authors:  Manabu Sugimoto; Yuta Kato; Kentaro Ishida; Changbae Hyun; Jiali Li; Toshiyuki Mitsui
Journal:  Nanotechnology       Date:  2015-01-22       Impact factor: 3.874

8.  Mechanical Trapping of DNA in a Double-Nanopore System.

Authors:  Sergii Pud; Shu-Han Chao; Maxim Belkin; Daniel Verschueren; Teun Huijben; Casper van Engelenburg; Cees Dekker; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2016-12-01       Impact factor: 11.189

9.  Water-Compression Gating of Nanopore Transport.

Authors:  James Wilson; Aleksei Aksimentiev
Journal:  Phys Rev Lett       Date:  2018-06-29       Impact factor: 9.161

10.  Translocation frequency of double-stranded DNA through a solid-state nanopore.

Authors:  Nicholas A W Bell; Murugappan Muthukumar; Ulrich F Keyser
Journal:  Phys Rev E       Date:  2016-02-01       Impact factor: 2.529

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.