Literature DB >> 2102858

Codon recognition mechanisms in plant chloroplasts.

H Pfitzinger1, J H Weil, D T Pillay, P Guillemaut.   

Abstract

In chloroplasts, all 61 sense codons are found in chloroplast (cp) DNA sequences coding for proteins. However among the sequenced cp tRNAs or tRNA genes, tRNAs with anticodons complementary to codons CUU/C (Leu), CCU/C (Pro), GCU/C (Ala) and CGC/A/G (Arg) [or CGC/A (Arg) in Marchantia] have not been found. In this paper we show that cp tRNA(Ala)(U*GC) cp tRNA(Pro)(U*GG) and cp tRNA(Arg)(ICG) are able to decode the corresponding four-codon family. In the case of leucine codons CUU/C, we show that 'U:U and U:C wobble' mechanisms can operate to allow the reading of these codons by cp tRNA(Leu)(UAm7G).

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Year:  1990        PMID： 2102858     DOI： 10.1007/bf00016513

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  28 in total

1.  Preparation of a tRNA-dependent wheat germ protein-synthesizing system.

Authors:  H Pfitzinger; J H Weil; D T Pillay; P Guillemaut
Journal:  Plant Mol Biol       Date:  1989-03       Impact factor: 4.076

2.  Translational control of globin synthesis by haemin in Xenopus oocytes.

Authors:  B Giglioni; A M Gianni; P Comi; S Ottolenghi; D Rungger
Journal:  Nat New Biol       Date:  1973-11-28

3.  Adjustment of the tRNA population to the codon usage in chloroplasts.

Authors:  H Pfitzinger; P Guillemaut; J H Weil; D T Pillay
Journal:  Nucleic Acids Res       Date:  1987-02-25       Impact factor: 16.971

4.  Size, conformation and purity of chloroplast DNA of some higher plants.

Authors:  R G Herrmann; H J Bohnert; K V Kowallik; J M Schmitt
Journal:  Biochim Biophys Acta       Date:  1975-01-20

5.  Nucleotide sequence of a spinach chloroplast proline tRNA.

Authors:  M Francis; M Kashdan; H Sprouse; L Otis; B Dudock
Journal:  Nucleic Acids Res       Date:  1982-04-24       Impact factor: 16.971

6.  Primary structure of three leucine transfer RNAs from bean chloroplast.

Authors:  M L Osorio-Almeida; P Guillemaut; G Keith; J Canaday; J H Weil
Journal:  Biochem Biophys Res Commun       Date:  1980-01-15       Impact factor: 3.575

7.  Columns for rapid chromatographic separation of small amounts of tracer-labeled transfer ribonucleic acids.

Authors:  A D Kelmers; D E Heatherly
Journal:  Anal Biochem       Date:  1971-12       Impact factor: 3.365

8.  Nucleotide sequences of three soybean chloroplast tRNAsLeu and re-examination of bean chloroplast tRNA2Leu sequence.

Authors:  D T Pillay; P Guillemaut; J H Weil
Journal:  Nucleic Acids Res       Date:  1984-03-26       Impact factor: 16.971

9.  Aberrations of the classic codon reading scheme during protein synthesis in vitro.

Authors:  T Samuelsson; P Elias; F Lustig; T Axberg; G Fölsch; B Akesson; U Lagerkvist
Journal:  J Biol Chem       Date:  1980-05-25       Impact factor: 5.157

Review 10.  Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.

Authors:  H Grosjean; W Fiers
Journal:  Gene       Date:  1982-06       Impact factor: 3.688
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  29 in total

1.  Complete 5' and 3' end maturation of group II intron-containing tRNA precursors.

Authors:  J Vogel; W R Hess
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

Review 2.  The chloroplast genome.

Authors:  M Sugiura
Journal:  Plant Mol Biol       Date:  1992-05       Impact factor: 4.076

3.  Transfer RNA genes in the mitochondrial genome from a liverwort, Marchantia polymorpha: the absence of chloroplast-like tRNAs.

Authors:  K Oda; K Yamato; E Ohta; Y Nakamura; M Takemura; N Nozato; K Akashi; K Ohyama
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

4.  Lack of a functional plastid tRNA(Cys) gene is associated with loss of photosynthesis in a lineage of parasitic plants.

Authors:  G W Taylor; K H Wolfe; C W Morden; C W dePamphilis; J D Palmer
Journal:  Curr Genet       Date:  1991-12       Impact factor: 3.886

Review 5.  Genome structure and gene content in protist mitochondrial DNAs.

Authors:  M W Gray; B F Lang; R Cedergren; G B Golding; C Lemieux; D Sankoff; M Turmel; N Brossard; E Delage; T G Littlejohn; I Plante; P Rioux; D Saint-Louis; Y Zhu; G Burger
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

6.  The absence of A-to-I editing in the anticodon of plant cytoplasmic tRNA (Arg) ACG demands a relaxation of the wobble decoding rules.

Authors:  Carolin A Aldinger; Anne-Katrin Leisinger; Kirk W Gaston; Patrick A Limbach; Gabor L Igloi
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

7.  A subset of conserved tRNA genes in plastid DNA of nongreen plants.

Authors:  A J Lohan; K H Wolfe
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

8.  Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.

Authors:  Etienne Delannoy; Monique Le Ret; Emmanuelle Faivre-Nitschke; Gonzalo M Estavillo; Marc Bergdoll; Nicolas L Taylor; Barry J Pogson; Ian Small; Patrice Imbault; José M Gualberto
Journal:  Plant Cell       Date:  2009-07-14       Impact factor: 11.277

9.  Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant.

Authors:  K H Wolfe; C W Morden; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

10.  Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes.

Authors:  Lei Gao; Xuan Yi; Yong-Xia Yang; Ying-Juan Su; Ting Wang
Journal:  BMC Evol Biol       Date:  2009-06-11       Impact factor: 3.260
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