| Literature DB >> 20961463 |
Johanna Korvala1, Heini Hartikka, Harri Pihlajamäki, Svetlana Solovieva, Juha-Petri Ruohola, Timo Sahi, Sandra Barral, Jürg Ott, Leena Ala-Kokko, Minna Männikkö.
Abstract
BACKGROUND: Stress fractures are a significant problem among athletes and soldiers and may result in devastating complications or even permanent handicap. Genetic factors may increase the risk, but no major susceptibility genes have been identified. The purpose of this study was to search for possible genetic factors predisposing military conscripts to femoral neck stress fractures.Entities:
Mesh:
Year: 2010 PMID: 20961463 PMCID: PMC2975640 DOI: 10.1186/1471-2156-11-95
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
Characteristics of cases and controls
| Characteristics | Cases | Controls | p-value |
|---|---|---|---|
| Age | 20.3 ± 1.6 | 18.9 ± 0.5 | 0.0005 |
| Height | 177.1 ± 6.0 | 179.6 ± 6.2 | 0.006 |
| Weight | 68.9 ± 9.6 | 77.3 ± 13.1 | 0.0005 |
| BMI | 22.0 ± 2.9 | 23.9 ± 3.5 | 0.0005 |
| Smoking (N and % smokers) | 29 (42.0%) | 67 (56.8%) | 0.069 |
Data are presented as mean ± SD
SNP allele frequencies between cases and controls
| Gene | Sequence variation | Detection method | Allele | Allele frequencies (%) | p-value | |
|---|---|---|---|---|---|---|
| Controls | Cases | |||||
| | c.2T > C, Met1Thr | C | 153 (64) | 90 (62) | ||
| T | 87 (36) | 54 (37) | NS | |||
| c.1024+283G > A | A | 90 (38) | 45 (31) | |||
| G | 150 (63) | 99 (69) | NS | |||
| c.1056T > C, Ile352Ile | C | 88 (37) | 45 (31) | |||
| T | 152 (63) | 99 (69) | NS | |||
| | -174G > C | C | 126 (52.5) | 72 (50) | ||
| G | 114 (47.5) | 72 (50) | NS | |||
| | c.1377C > T, Pro463Leu | C | 73 (30) | 35 (24) | ||
| T | 167 (70) | 109 (76) | NS | |||
| | c.101+1024G > T | Sequencing | G | 204 (85) | 123 (85) | |
| T | 36 (15) | 21 (15) | NS | |||
| c.1930-14T > C | CSGE | C | 41 (17) | 28 (19) | ||
| T | 199 (83) | 116 (81) | NS | |||
| c.3261C > T | C | 158 (66) | 87 (60) | |||
| T | 82 (34) | 57 (40) | NS | |||
| | c.280-68A > G | CSGE | A | 206 (86) | 120 (83) | |
| G | 34 (14) | 24 (17) | NS | |||
| c.1666-41G > A | A | 32 (13) | 24 (17) | |||
| G | 208 (87) | 120 (83) | NS | |||
| c.2350-89ins38bp | CSGE | insertion | 151 (63) | 96 (67) | ||
| no ins. | 89 (37) | 48 (33) | NS | |||
| | c.2007G > A, E644E | Sequencing | G | 231 (96) | 131 (91) | |
| A | 9 (4) | 13 (9) | ||||
| c.2074G > A, V667M | Sequencing | G | 235 (98) | 137 (95) | ||
| A | 5 (2) | 7 (5) | NS | |||
| c.3432A > G, V1119V | Sequencing | A | 200 (83) | 112 (78) | ||
| G | 40 (17) | 32 (22) | NS | |||
| c.4064C > T, A1330V | Sequencing | C | 227 (95) | 134 (93) | ||
| T | 13 (5) | 10 (7) | NS | |||
NS = not significant; GenBank Accession numbers COL1A1 NM_000088, COL1A2 NM_000089, VDR NM_000376, LRP5 NM_002335, CTR NM_001742; 1NS permutation p-value, p = 0.21.
Genotype distributions, odds ratios (OR), and their 95% confidence intervals (CI) and p-values for the genetic models
| p-value | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Gene | SNPs ID | Genotype | Counts | OR | 95% CI | General association | Dominant | Additive | Recessive |
| rs10735810 | C/C | 41/29 | 1 | 0.24 | 0.57 | 0.80 | 0.18 | ||
| T/C | 58/30 | 0.71 | 0.38-1.35 | ||||||
| T/T | 11/10 | 1.50 | 0.60-3.78 | ||||||
| rs1544410 | G/G | 46/17 | 1 | 0.15 | 0.08 | 0.22 | 0.91 | ||
| G/A | 58/25 | 0.54 | 0.28-1.01 | ||||||
| A/A | 16/10 | 0.78 | 0.32-1.91 | ||||||
| rs731236 | T/T | 49/37 | 1 | 0.32 | 0.15 | 0.30 | 0.96 | ||
| T/C | 54/25 | 0.61 | 0.32-1.16 | ||||||
| C/C | 17/10 | 0.78 | 0.32-1.90 | ||||||
| rs1800795 | G/G | 35/15 | 1 | 0.27 | 0.20 | 0.63 | 0.59 | ||
| G/C | 56/42 | 1.75 | 0.85-3.61 | ||||||
| C/C | 29/15 | 1.21 | 0.51-2.88 | ||||||
| rs1922295 | T/T | 59/45 | 1 | 0.12 | 0.07 | 0.22 | 0.81 | ||
| T/C | 49/19 | ||||||||
| C/C | 12/8 | 0.87 | 0.33-2.32 | ||||||
| rs1800012 | G/G | 85/53 | 1 | 0.48 | 0.68 | 0.91 | 0.30 | ||
| G/T | 34/17 | 0.80 | 0.41-1.58 | ||||||
| T/T | 1/2 | 3.21 | 0.28-36.25 | ||||||
| rs2696247 | T/T | 189/100 | 1 | 0.45 | - | ||||
| T/C | 123/88 | 1.27 | 0.68-2.35 | ||||||
| rs2586488 | C/C | 50/30 | 1 | 0.09 | 1.0 | 0.30 | |||
| C/T | 58/27 | 0.78 | 0.41-1.48 | ||||||
| T/T | 12/15 | 2.08 | 0.86-5.04 | ||||||
| rs406226 | A/A | 86/50 | 1 | 0.14 | 0.74 | 0.49 | - | ||
| A/G | 34/20 | 1.01 | 0.53-1.94 | ||||||
| G/G | 0/2 | - | - | ||||||
| rs2301643 | G/G | 88/50 | 1 | 0.13 | 0.56 | 0.35 | - | ||
| G/A | 32/20 | 1.10 | 0.57-2.12 | ||||||
| A/A | 0/2 | - | - | ||||||
| rs3216902 | Ins/Ins | 52/29 | 1 | 0.68 | 0.46 | ||||
| Ins/NoI | 47/38 | 1.45 | 0.78-2.71 | ||||||
| NoI/NoI | 21/5 | 0.43 | 0.15-1.25 | ||||||
| rs2277268 | G/G | 111/59 | 1 | - | - | - | |||
| G/A | 9/13 | ||||||||
| rs4988321 | G/G | 115/65 | 1 | 0.13 | - | - | - | ||
| G/A | 5/7 | 2.48 | 0.76-8.12 | ||||||
| rs556442 | A/A | 82/43 | 1 | 0.36 | 0.23 | 0.17 | 0.30 | ||
| A/G | 36/26 | 1.38 | 0.74-2.57 | ||||||
| G/G | 2/3 | 2.86 | 0.46-17.78 | ||||||
| rs3736228 | C/C | 107/62 | 1 | 0.53 | - | - | - | ||
| C/T | 13/100 | 1.33 | 0.55-3.21 | ||||||
1OR = 2.37, 95% CI 1.04-5.40. 2OR = 0.35, 95% CI 0.13-0.98. Body mass index (BMI) was used as a covariate in the analyses.
Figure 1A) Haploview linkage disequilibirum (LD) plot of the VDR SNPs, B) Haploview LD plot of the COL1A1 SNPs, C) Haploview LD plot of the COL1A2 SNPs, and D) Haploview LD plot of the LRP5 SNPs. D' values are indicated in the figure.
LRP5 A-G-G-C haplotype and VDR C-A haplotype interaction
| Controls | Cases | ||||||
|---|---|---|---|---|---|---|---|
| A-G-G-C | C-A | N | fr. | N | fr. | OR (95% CI) | p-value |
| - or + | - | 50 | 0.383 | 37 | 0.444 | 1.78 (0.96-3.30)1 | 0.07 |
| - | + | 65 | 0.542 | 27 | 0.375 | 1.00 | |
| + | + | 5 | 0.042 | 8 | 0.111 | ||
11.85 (0.96-3.55) after adjustment for body mass index (BMI)
23.10 (0.87-11.1) after adjustment for body mass index (BMI)