Literature DB >> 20960466

The ribosomal basis of Diamond-Blackfan Anemia: mutation and database update.

Ilenia Boria1, Emanuela Garelli, Hanna T Gazda, Anna Aspesi, Paola Quarello, Elisa Pavesi, Daniela Ferrante, Joerg J Meerpohl, Mutlu Kartal, Lydie Da Costa, Alexis Proust, Thierry Leblanc, Maud Simansour, Niklas Dahl, Anne-Sophie Fröjmark, Dagmar Pospisilova, Radek Cmejla, Alan H Beggs, Mee R Sheen, Michael Landowski, Christopher M Buros, Catherine M Clinton, Lori J Dobson, Adrianna Vlachos, Eva Atsidaftos, Jeffrey M Lipton, Steven R Ellis, Ugo Ramenghi, Irma Dianzani.   

Abstract

Diamond-Blackfan Anemia (DBA) is characterized by a defect of erythroid progenitors and, clinically, by anemia and malformations. DBA exhibits an autosomal dominant pattern of inheritance with incomplete penetrance. Currently nine genes, all encoding ribosomal proteins (RP), have been found mutated in approximately 50% of patients. Experimental evidence supports the hypothesis that DBA is primarily the result of defective ribosome synthesis. By means of a large collaboration among six centers, we report here a mutation update that includes nine genes and 220 distinct mutations, 56 of which are new. The DBA Mutation Database now includes data from 355 patients. Of those where inheritance has been examined, 125 patients carry a de novo mutation and 72 an inherited mutation. Mutagenesis may be ascribed to slippage in 65.5% of indels, whereas CpG dinucleotides are involved in 23% of transitions. Using bioinformatic tools we show that gene conversion mechanism is not common in RP genes mutagenesis, notwithstanding the abundance of RP pseudogenes. Genotype-phenotype analysis reveals that malformations are more frequently associated with mutations in RPL5 and RPL11 than in the other genes. All currently reported DBA mutations together with their functional and clinical data are included in the DBA Mutation Database.
© 2010 Wiley-Liss, Inc.

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Year:  2010        PMID: 20960466      PMCID: PMC4485435          DOI: 10.1002/humu.21383

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  51 in total

1.  Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion.

Authors:  J T den Dunnen; S E Antonarakis
Journal:  Hum Mutat       Date:  2000       Impact factor: 4.878

2.  Human ribosomal protein S26 suppresses the splicing of its pre-mRNA.

Authors:  Anton V Ivanov; Alexey A Malygin; Galina G Karpova
Journal:  Biochim Biophys Acta       Date:  2005-01-18

3.  Elevated red cell adenosine deaminase activity: a marker of disordered erythropoiesis in Diamond-Blackfan anaemia and other haematologic diseases.

Authors:  B E Glader; K Backer
Journal:  Br J Haematol       Date:  1988-02       Impact factor: 6.998

4.  Human RPS19, the gene mutated in Diamond-Blackfan anemia, encodes a ribosomal protein required for the maturation of 40S ribosomal subunits.

Authors:  Johan Flygare; Anna Aspesi; Joshua C Bailey; Koichi Miyake; Jacqueline M Caffrey; Stefan Karlsson; Steven R Ellis
Journal:  Blood       Date:  2006-09-21       Impact factor: 22.113

5.  LOVD: easy creation of a locus-specific sequence variation database using an "LSDB-in-a-box" approach.

Authors:  Ivo F A C Fokkema; Johan T den Dunnen; Peter E M Taschner
Journal:  Hum Mutat       Date:  2005-08       Impact factor: 4.878

6.  Ribosomal protein S7 as a novel modulator of p53-MDM2 interaction: binding to MDM2, stabilization of p53 protein, and activation of p53 function.

Authors:  D Chen; Z Zhang; M Li; W Wang; Y Li; E R Rayburn; D L Hill; H Wang; R Zhang
Journal:  Oncogene       Date:  2007-02-19       Impact factor: 9.867

7.  Diamond-Blackfan anemia: genotype-phenotype correlations in Italian patients with RPL5 and RPL11 mutations.

Authors:  Paola Quarello; Emanuela Garelli; Adriana Carando; Alfredo Brusco; Roberto Calabrese; Carlo Dufour; Daniela Longoni; Aldo Misuraca; Luciana Vinti; Anna Aspesi; Laura Biondini; Fabrizio Loreni; Irma Dianzani; Ugo Ramenghi
Journal:  Haematologica       Date:  2009-09-22       Impact factor: 9.941

8.  A novel initiation codon mutation in the ribosomal protein S17 gene (RPS17) in a patient with Diamond-Blackfan anemia.

Authors:  Min-Jung Song; Eun-Hyung Yoo; Ki-O Lee; Gee-Na Kim; Hee-Jin Kim; Sun-Young Kim; Sun-Hee Kim
Journal:  Pediatr Blood Cancer       Date:  2010-04       Impact factor: 3.167

9.  Abnormalities of the large ribosomal subunit protein, Rpl35a, in Diamond-Blackfan anemia.

Authors:  Jason E Farrar; Michelle Nater; Emi Caywood; Michael A McDevitt; Jeanne Kowalski; Clifford M Takemoto; C Conover Talbot; Paul Meltzer; Diane Esposito; Alan H Beggs; Hal E Schneider; Agnieszka Grabowska; Sarah E Ball; Edyta Niewiadomska; Colin A Sieff; Adrianna Vlachos; Eva Atsidaftos; Steven R Ellis; Jeffrey M Lipton; Hanna T Gazda; Robert J Arceci
Journal:  Blood       Date:  2008-06-05       Impact factor: 22.113

10.  Cells depleted for RPS19, a protein associated with Diamond Blackfan Anemia, show defects in 18S ribosomal RNA synthesis and small ribosomal subunit production.

Authors:  Rachel A Idol; Sara Robledo; Hong-Yan Du; Dan L Crimmins; David B Wilson; Jack H Ladenson; Monica Bessler; Philip J Mason
Journal:  Blood Cells Mol Dis       Date:  2007-03-21       Impact factor: 3.039

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  105 in total

1.  High frequency of ribosomal protein gene deletions in Italian Diamond-Blackfan anemia patients detected by multiplex ligation-dependent probe amplification assay.

Authors:  Paola Quarello; Emanuela Garelli; Alfredo Brusco; Adriana Carando; Cecilia Mancini; Patrizia Pappi; Luciana Vinti; Johanna Svahn; Irma Dianzani; Ugo Ramenghi
Journal:  Haematologica       Date:  2012-06-11       Impact factor: 9.941

Review 2.  Neonatal manifestations of inherited bone marrow failure syndromes.

Authors:  Payal P Khincha; Sharon A Savage
Journal:  Semin Fetal Neonatal Med       Date:  2015-12-24       Impact factor: 3.926

Review 3.  Applications of high-throughput DNA sequencing to benign hematology.

Authors:  Vijay G Sankaran; Patrick G Gallagher
Journal:  Blood       Date:  2013-09-10       Impact factor: 22.113

4.  The Genetic Landscape of Diamond-Blackfan Anemia.

Authors:  Jacob C Ulirsch; Jeffrey M Verboon; Shideh Kazerounian; Michael H Guo; Daniel Yuan; Leif S Ludwig; Robert E Handsaker; Nour J Abdulhay; Claudia Fiorini; Giulio Genovese; Elaine T Lim; Aaron Cheng; Beryl B Cummings; Katherine R Chao; Alan H Beggs; Casie A Genetti; Colin A Sieff; Peter E Newburger; Edyta Niewiadomska; Michal Matysiak; Adrianna Vlachos; Jeffrey M Lipton; Eva Atsidaftos; Bertil Glader; Anupama Narla; Pierre-Emmanuel Gleizes; Marie-Françoise O'Donohue; Nathalie Montel-Lehry; David J Amor; Steven A McCarroll; Anne H O'Donnell-Luria; Namrata Gupta; Stacey B Gabriel; Daniel G MacArthur; Eric S Lander; Monkol Lek; Lydie Da Costa; David G Nathan; Andrei A Korostelev; Ron Do; Vijay G Sankaran; Hanna T Gazda
Journal:  Am J Hum Genet       Date:  2018-11-29       Impact factor: 11.025

Review 5.  Specialized ribosomes: a new frontier in gene regulation and organismal biology.

Authors:  Shifeng Xue; Maria Barna
Journal:  Nat Rev Mol Cell Biol       Date:  2012-05-23       Impact factor: 94.444

Review 6.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

7.  Using induced human pluripotent stem cells to study Diamond-Blackfan anemia: an outlook on the clinical possibilities.

Authors:  Philip J Mason; Nieves Perdigones; Monica Bessler
Journal:  Expert Rev Hematol       Date:  2013-12       Impact factor: 2.929

8.  Incomplete penetrance for isolated congenital asplenia in humans with mutations in translated and untranslated RPSA exons.

Authors:  Alexandre Bolze; Bertrand Boisson; Barbara Bosch; Alexander Antipenko; Matthieu Bouaziz; Paul Sackstein; Malik Chaker-Margot; Vincent Barlogis; Tracy Briggs; Elena Colino; Aurora C Elmore; Alain Fischer; Ferah Genel; Angela Hewlett; Maher Jedidi; Jadranka Kelecic; Renate Krüger; Cheng-Lung Ku; Dinakantha Kumararatne; Alain Lefevre-Utile; Sam Loughlin; Nizar Mahlaoui; Susanne Markus; Juan-Miguel Garcia; Mathilde Nizon; Matias Oleastro; Malgorzata Pac; Capucine Picard; Andrew J Pollard; Carlos Rodriguez-Gallego; Caroline Thomas; Horst Von Bernuth; Austen Worth; Isabelle Meyts; Maurizio Risolino; Licia Selleri; Anne Puel; Sebastian Klinge; Laurent Abel; Jean-Laurent Casanova
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-02       Impact factor: 11.205

9.  Erythrocyte adenosine deaminase: diagnostic value for Diamond-Blackfan anaemia.

Authors:  John H Fargo; Christian P Kratz; Neelam Giri; Sharon A Savage; Carolyn Wong; Karen Backer; Blanche P Alter; Bertil Glader
Journal:  Br J Haematol       Date:  2012-12-17       Impact factor: 6.998

10.  Erythropoiesis in the absence of adult hemoglobin.

Authors:  Shanrun Liu; Sean C McConnell; Thomas M Ryan
Journal:  Mol Cell Biol       Date:  2013-03-25       Impact factor: 4.272

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