Literature DB >> 20960285

A novel RT-LAMP assay for rapid and simple detection of classical swine fever virus.

Lei Chen1, Xue-zheng Fan, Qin Wang, Lu Xu, Qi-zu Zhao, Yuan-chen Zhou, Jun Liu, Bo Tang, Xing-qi Zou.   

Abstract

A simple and rapid assay for the detection of Classical swine fever virus (CSFV) was established using reverse transcription loop-mediated isothermal amplification (RT-LAMP). This study describes the amplification of the genomic RNA of CSFV under isothermal conditions (63 °C) within one hour, using a set of six primers (two outer primers, two inner primers and two loop primers). This RT-LAMP assay showed 100-fold higher sensitivity than the standard RT-PCR method and identified eighteen additional positive cases that were negative when tested by RT-PCR. This RT-LAMP was able to detect all the 13 strains of CSFV but not the BVDV. PRRSV. SIV. PRV-PCV, thus showed a good specificity. Products amplified by RT-LAMP can be visualized by agarose gel electrophoresis and in addition, either as a white precipitate at the bottom of the tube after a pulse spin or as a color change when dyed with SYBR Green I which are visible to the naked eye. Because RT-LAMP is low-cost and produces rapid results, it has the potential to be an excellent tool for CSFV surveillance in the field, especially in developing countries.

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Year:  2010        PMID: 20960285      PMCID: PMC8227920          DOI: 10.1007/s12250-010-3043-2

Source DB:  PubMed          Journal:  Virol Sin        ISSN: 1995-820X            Impact factor:   4.327


  11 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation.

Authors:  Y Mori; K Nagamine; N Tomita; T Notomi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-23       Impact factor: 3.575

3.  Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus.

Authors:  Manmohan Parida; Guillermo Posadas; Shingo Inoue; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

4.  Accelerated reaction by loop-mediated isothermal amplification using loop primers.

Authors:  K Nagamine; T Hase; T Notomi
Journal:  Mol Cell Probes       Date:  2002-06       Impact factor: 2.365

5.  Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification.

Authors:  Hiroko Toriniwa; Tomoyoshi Komiya
Journal:  Microbiol Immunol       Date:  2006       Impact factor: 1.955

Review 6.  Diagnostic methods for detection of Classical swine fever virus--status quo and new developments.

Authors:  Irene Greiser-Wilke; Sandra Blome; Volker Moennig
Journal:  Vaccine       Date:  2006-11-28       Impact factor: 3.641

7.  Rapid detection of norovirus from fecal specimens by real-time reverse transcription-loop-mediated isothermal amplification assay.

Authors:  Shinji Fukuda; Shinichi Takao; Masaru Kuwayama; Yukie Shimazu; Kazuo Miyazaki
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

8.  Development and evaluation of reverse transcription-loop-mediated isothermal amplification assay for rapid and real-time detection of Japanese encephalitis virus.

Authors:  M M Parida; S R Santhosh; P K Dash; N K Tripathi; P Saxena; S Ambuj; A K Sahni; P V Lakshmana Rao; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2006-09-27       Impact factor: 5.948

9.  Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus.

Authors:  J P Dukes; D P King; S Alexandersen
Journal:  Arch Virol       Date:  2006-02-02       Impact factor: 2.574

Review 10.  Loop-mediated isothermal amplification: an emerging technology for detection of fish and shellfish pathogens.

Authors:  R Savan; T Kono; T Itami; M Sakai
Journal:  J Fish Dis       Date:  2005-10       Impact factor: 2.767

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  5 in total

1.  Development of a loop-mediated isothermal amplification assay for porcine circovirus type 2.

Authors:  Ye-Bing Liu; Lei Zhang; Qin-Hong Xue; Yi-Bao Ning; Zhi-Gang Zhang
Journal:  Virol Sin       Date:  2011-06-12       Impact factor: 4.327

2.  Hinge-initiated Primer-dependent Amplification of Nucleic Acids (HIP) - A New Versatile Isothermal Amplification Method.

Authors:  Jens Fischbach; Marcus Frohme; Jörn Glökler
Journal:  Sci Rep       Date:  2017-08-09       Impact factor: 4.379

3.  Development and evaluation of recombinase-aided amplification assays incorporating competitive internal controls for detection of human adenovirus serotypes 3 and 7.

Authors:  Rui-Huan Wang; Hong Zhang; Yi Zhang; Xin-Na Li; Xin-Xin Shen; Ju-Ju Qi; Guo-Hao Fan; Xing-Yu Xiang; Zhi-Fei Zhan; Zi-Wei Chen; Xue-Jun Ma
Journal:  Virol J       Date:  2019-07-01       Impact factor: 4.099

Review 4.  Classical Swine Fever-An Updated Review.

Authors:  Sandra Blome; Christoph Staubach; Julia Henke; Jolene Carlson; Martin Beer
Journal:  Viruses       Date:  2017-04-21       Impact factor: 5.048

5.  A reverse transcription loop-mediated isothermal amplification method for rapid detection of bovine viral diarrhea virus.

Authors:  Qing Fan; Zhixun Xie; Liji Xie; Jiabo Liu; Yaoshan Pang; Xianwen Deng; Zhiqin Xie; Yi Peng; Xiuqing Wang
Journal:  J Virol Methods       Date:  2012-08-27       Impact factor: 2.014

  5 in total

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