Literature DB >> 20953188

Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.

Eva Ellinghaus1, David Ellinghaus, Philip E Stuart, Rajan P Nair, Sophie Debrus, John V Raelson, Majid Belouchi, Hélène Fournier, Claudia Reinhard, Jun Ding, Yun Li, Trilokraj Tejasvi, Johann Gudjonsson, Stefan W Stoll, John J Voorhees, Sylviane Lambert, Stephan Weidinger, Bernadette Eberlein, Manfred Kunz, Proton Rahman, Dafna D Gladman, Christian Gieger, H Erich Wichmann, Tom H Karlsen, Gabriele Mayr, Mario Albrecht, Dieter Kabelitz, Ulrich Mrowietz, Gonçalo R Abecasis, James T Elder, Stefan Schreiber, Michael Weichenthal, Andre Franke.   

Abstract

Psoriasis is a multifactorial skin disease characterized by epidermal hyperproliferation and chronic inflammation, the most common form of which is psoriasis vulgaris (PsV). We present a genome-wide association analysis of 2,339,118 SNPs in 472 PsV cases and 1,146 controls from Germany, with follow-up of the 147 most significant SNPs in 2,746 PsV cases and 4,140 controls from three independent replication panels. We identified an association at TRAF3IP2 on 6q21 and genotyped two SNPs at this locus in two additional replication panels (the combined discovery and replication panels consisted of 6,487 cases and 8,037 controls; combined P = 2.36 × 10⁻¹⁰ for rs13210247 and combined P = 1.24 × 10⁻¹⁶ for rs33980500). About 15% of psoriasis cases develop psoriatic arthritis (PsA). A stratified analysis of our datasets including only PsA cases (1,922 cases compared to 8,037 controls, P = 4.57 × 10⁻¹² for rs33980500) suggested that TRAF3IP2 represents a shared susceptibility for PsV and PsA. TRAF3IP2 encodes a protein involved in IL-17 signaling and which interacts with members of the Rel/NF-κB transcription factor family.

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Year:  2010        PMID: 20953188      PMCID: PMC3136364          DOI: 10.1038/ng.689

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  35 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Genetics of psoriasis: the potential impact on new therapies.

Authors:  Anne M Bowcock; Jonathan N Barker
Journal:  J Am Acad Dermatol       Date:  2003-08       Impact factor: 11.527

3.  Interleukin-12 p40 gene (IL12B) 3'-untranslated region polymorphism is associated with susceptibility to atopic dermatitis and psoriasis vulgaris.

Authors:  Yuichiro Tsunemi; Hidehisa Saeki; Koichiro Nakamura; Takashi Sekiya; Koichi Hirai; Hideki Fujita; Noriko Asano; Megumi Kishimoto; Yuka Tanida; Takashi Kakinuma; Hiroshi Mitsui; Yayoi Tada; Motoshi Wakugawa; Hideshi Torii; Mayumi Komine; Akihiko Asahina; Kunihiko Tamaki
Journal:  J Dermatol Sci       Date:  2002-11       Impact factor: 4.563

4.  Amphiregulin carboxy-terminal domain is required for autocrine keratinocyte growth.

Authors:  Stefan W Stoll; Jessica L Johnson; Yong Li; Laure Rittié; James T Elder
Journal:  J Invest Dermatol       Date:  2010-04-29       Impact factor: 8.551

5.  Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array.

Authors:  Xianghong Zhou; James G Krueger; Ming-Chih J Kao; Ed Lee; Fenghe Du; Alan Menter; Wing Hung Wong; Anne M Bowcock
Journal:  Physiol Genomics       Date:  2003-03-18       Impact factor: 3.107

6.  Act1, a negative regulator in CD40- and BAFF-mediated B cell survival.

Authors:  Youcun Qian; Jinzhong Qin; Grace Cui; Mayumi Naramura; E Charles Snow; Carl F Ware; Robert L Fairchild; Sidne A Omori; Robert C Rickert; Martin Scott; Brian L Kotzin; Xiaoxia Li
Journal:  Immunity       Date:  2004-10       Impact factor: 31.745

7.  Metalloproteinase-mediated, context-dependent function of amphiregulin and HB-EGF in human keratinocytes and skin.

Authors:  Stefan W Stoll; Jessica L Johnson; Ajay Bhasin; Andrew Johnston; Johann E Gudjonsson; Laure Rittié; James T Elder
Journal:  J Invest Dermatol       Date:  2010-01       Impact factor: 8.551

8.  Distinct molecular mechanism for initiating TRAF6 signalling.

Authors:  Hong Ye; Joseph R Arron; Betty Lamothe; Maurizio Cirilli; Takashi Kobayashi; Nirupama K Shevde; Deena Segal; Oki K Dzivenu; Masha Vologodskaia; Mijung Yim; Khoi Du; Sujay Singh; J Wesley Pike; Bryant G Darnay; Yongwon Choi; Hao Wu
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

Review 9.  Genotype imputation.

Authors:  Yun Li; Cristen Willer; Serena Sanna; Gonçalo Abecasis
Journal:  Annu Rev Genomics Hum Genet       Date:  2009       Impact factor: 8.929

10.  An association study of 22 candidate genes in psoriasis families reveals shared genetic factors with other autoimmune and skin disorders.

Authors:  Tiphaine Oudot; Fabienne Lesueur; Mickaël Guedj; Rafael de Cid; Steven McGinn; Simon Heath; Mario Foglio; Bernard Prum; Mark Lathrop; Jean-François Prud'homme; Judith Fischer
Journal:  J Invest Dermatol       Date:  2009-06-25       Impact factor: 8.551

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  147 in total

1.  [Genetics of common chronic inflammatory skin diseases : An update on atopic dermatitis and psoriasis].

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Journal:  Hautarzt       Date:  2011-02       Impact factor: 0.751

2.  Performance of genotype imputations using data from the 1000 Genomes Project.

Authors:  Yun Ju Sung; Lihua Wang; Tuomo Rankinen; Claude Bouchard; D C Rao
Journal:  Hum Hered       Date:  2011-12-30       Impact factor: 0.444

Review 3.  The genetics of psoriasis and psoriatic arthritis.

Authors:  Vinod Chandran
Journal:  Clin Rev Allergy Immunol       Date:  2013-04       Impact factor: 8.667

Review 4.  What have genome-wide studies told us about psoriatic arthritis?

Authors:  James Bluett; Anne Barton
Journal:  Curr Rheumatol Rep       Date:  2012-08       Impact factor: 4.592

Review 5.  Function of Act1 in IL-17 family signaling and autoimmunity.

Authors:  Ling Wu; Jarod Zepp; Xiaoxia Li
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

6.  Update in dermatology.

Authors:  Calin Giurcaneanu
Journal:  Maedica (Buchar)       Date:  2011-01

7.  Association of IL23R polymorphisms with psoriasis and psoriatic arthritis: a meta-analysis.

Authors:  Kun-Ju Zhu; Cheng-Yao Zhu; Ge Shi; Yi-Ming Fan
Journal:  Inflamm Res       Date:  2012-06-17       Impact factor: 4.575

8.  Genotype imputation for African Americans using data from HapMap phase II versus 1000 genomes projects.

Authors:  Yun J Sung; C Charles Gu; Hemant K Tiwari; Donna K Arnett; Ulrich Broeckel; Dabeeru C Rao
Journal:  Genet Epidemiol       Date:  2012-05-29       Impact factor: 2.135

9.  Identification of cell types, tissues and pathways affected by risk loci in psoriasis.

Authors:  Yan Lin; Pan Zhao; Changbing Shen; Songke Shen; Xiaodong Zheng; Xianbo Zuo; Sen Yang; Xuejun Zhang; Xianyong Yin
Journal:  Mol Genet Genomics       Date:  2015-11-12       Impact factor: 3.291

10.  Integrating pathway analysis and genetics of gene expression for genome-wide association study of basal cell carcinoma.

Authors:  Mingfeng Zhang; Liming Liang; Nilesh Morar; Anna L Dixon; G Mark Lathrop; Jun Ding; Miriam F Moffatt; William O C Cookson; Peter Kraft; Abrar A Qureshi; Jiali Han
Journal:  Hum Genet       Date:  2011-10-18       Impact factor: 4.132

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