Literature DB >> 20952571

Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b.

Lisa Y Stein1, Sukhwan Yoon, Jeremy D Semrau, Alan A Dispirito, Andrew Crombie, J Colin Murrell, Stéphane Vuilleumier, Marina G Kalyuzhnaya, Huub J M Op den Camp, Françoise Bringel, D Bruce, J-F Cheng, A Copeland, Lynne Goodwin, Shunsheng Han, Loren Hauser, Mike S M Jetten, Aurélie Lajus, M L Land, A Lapidus, S Lucas, Claudine Médigue, S Pitluck, Tanja Woyke, Ahmet Zeytun, Martin G Klotz.   

Abstract

Methylosinus trichosporium OB3b (for "oddball" strain 3b) is an obligate aerobic methane-oxidizing alphaproteobacterium that was originally isolated in 1970 by Roger Whittenbury and colleagues. This strain has since been used extensively to elucidate the structure and function of several key enzymes of methane oxidation, including both particulate and soluble methane monooxygenase (sMMO) and the extracellular copper chelator methanobactin. In particular, the catalytic properties of soluble methane monooxygenase from M. trichosporium OB3b have been well characterized in context with biodegradation of recalcitrant hydrocarbons, such as trichloroethylene. The sequence of the M. trichosporium OB3b genome is the first reported from a member of the Methylocystaceae family in the order Rhizobiales.

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Year:  2010        PMID: 20952571      PMCID: PMC3008524          DOI: 10.1128/JB.01144-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  20 in total

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Journal:  Arch Microbiol       Date:  2002-01-31       Impact factor: 2.552

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Authors:  Ann P Wood; Jukka P Aurikko; Donovan P Kelly
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3.  Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2.

Authors:  Yin Chen; Andrew Crombie; M Tanvir Rahman; Svetlana N Dedysh; Werner Liesack; Matthew B Stott; Maqsudul Alam; Andreas R Theisen; J Colin Murrell; Peter F Dunfield
Journal:  J Bacteriol       Date:  2010-05-14       Impact factor: 3.490

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia.

Authors:  Huub J M Op den Camp; Tajul Islam; Matthew B Stott; Harry R Harhangi; Alexander Hynes; Stefan Schouten; Mike S M Jetten; Nils-Kåre Birkeland; Arjan Pol; Peter F Dunfield
Journal:  Environ Microbiol Rep       Date:  2009-03-03       Impact factor: 3.541

Review 6.  The assimilatory nitrate reduction system of the phototrophic bacterium Rhodobacter capsulatus E1F1.

Authors:  C Pino; F Olmo-Mira; P Cabello; M Martínez-Luque; F Castillo; M D Roldán; C Moreno-Vivián
Journal:  Biochem Soc Trans       Date:  2006-02       Impact factor: 5.407

7.  (1-14C) acetate assimilation by obligate methylotrophs, Pseudomonas methanica and Methylosinus trichosporium.

Authors:  R N Patel; S L Hoare; D S Hoare
Journal:  Antonie Van Leeuwenhoek       Date:  1979       Impact factor: 2.271

8.  Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.

Authors:  Sung-Woo Lee; Jeongdae Im; Alan A Dispirito; Levente Bodrossy; Michael J Barcelona; Jeremy D Semrau
Journal:  Appl Microbiol Biotechnol       Date:  2009-09-29       Impact factor: 4.813

9.  Nitrite and nitrous oxide production by Methylosinus trichosporium.

Authors:  T Yoshinari
Journal:  Can J Microbiol       Date:  1985-02       Impact factor: 2.419

10.  Roles of c-type cytochromes in respiration in Neisseria meningitidis.

Authors:  Manu Deeudom; Michael Koomey; James W B Moir
Journal:  Microbiology (Reading)       Date:  2008-09       Impact factor: 2.777

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  39 in total

Review 1.  Chemistry and biology of the copper chelator methanobactin.

Authors:  Grace E Kenney; Amy C Rosenzweig
Journal:  ACS Chem Biol       Date:  2011-12-12       Impact factor: 5.100

Review 2.  Architecture and active site of particulate methane monooxygenase.

Authors:  Megen A Culpepper; Amy C Rosenzweig
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-06-23       Impact factor: 8.250

3.  Marker Exchange Mutagenesis of mxaF, Encoding the Large Subunit of the Mxa Methanol Dehydrogenase, in Methylosinus trichosporium OB3b.

Authors:  Muhammad Farhan Ul Haque; Wenyu Gu; Alan A DiSpirito; Jeremy D Semrau
Journal:  Appl Environ Microbiol       Date:  2015-12-28       Impact factor: 4.792

4.  Genome-scale revealing the central metabolic network of the fast growing methanotroph Methylomonas sp. ZR1.

Authors:  Wei Guo; Yang Li; Ronglin He; Wuxi Chen; Feng Gao; Demao Li; Xiaoping Liao
Journal:  World J Microbiol Biotechnol       Date:  2021-01-16       Impact factor: 3.312

5.  Microbial minorities modulate methane consumption through niche partitioning.

Authors:  Paul L E Bodelier; Marion Meima-Franke; Cornelis A Hordijk; Anne K Steenbergh; Mariet M Hefting; Levente Bodrossy; Martin von Bergen; Jana Seifert
Journal:  ISME J       Date:  2013-06-20       Impact factor: 10.302

6.  Genome sequence of the methanotrophic poly-β-hydroxybutyrate producer Methylocystis parvus OBBP.

Authors:  Carlos del Cerro; Jesús M García; Antonia Rojas; Marta Tortajada; Daniel Ramón; Beatriz Galán; María A Prieto; José L García
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

7.  Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

Authors:  Lisa Y Stein; Françoise Bringel; Alan A DiSpirito; Sukkyun Han; Mike S M Jetten; Marina G Kalyuzhnaya; K Dimitri Kits; Martin G Klotz; Huub J M Op den Camp; Jeremy D Semrau; Stéphane Vuilleumier; David C Bruce; Jan-Fang Cheng; Karen W Davenport; Lynne Goodwin; Shunsheng Han; Loren Hauser; Aurélie Lajus; Miriam L Land; Alla Lapidus; Susan Lucas; Claudine Médigue; Sam Pitluck; Tanja Woyke
Journal:  J Bacteriol       Date:  2011-03-25       Impact factor: 3.490

Review 8.  Chalkophores.

Authors:  Grace E Kenney; Amy C Rosenzweig
Journal:  Annu Rev Biochem       Date:  2018-04-18       Impact factor: 23.643

9.  Methane Monooxygenase Gene Transcripts as Quantitative Biomarkers of Methanotrophic Activity in Methylosinus trichosporium OB3b.

Authors:  Egidio F Tentori; Ruth E Richardson
Journal:  Appl Environ Microbiol       Date:  2020-11-10       Impact factor: 4.792

10.  Recent Advances in the Genetic Manipulation of Methylosinus trichosporium OB3b.

Authors:  Soo Y Ro; Amy C Rosenzweig
Journal:  Methods Enzymol       Date:  2018-04-11       Impact factor: 1.600

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