Literature DB >> 20472789

Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2.

Yin Chen1, Andrew Crombie, M Tanvir Rahman, Svetlana N Dedysh, Werner Liesack, Matthew B Stott, Maqsudul Alam, Andreas R Theisen, J Colin Murrell, Peter F Dunfield.   

Abstract

Methylocella silvestris BL2 is an aerobic methanotroph originally isolated from an acidic forest soil in Germany. It is the first fully authenticated facultative methanotroph. It grows not only on methane and other one-carbon (C(1)) substrates, but also on some compounds containing carbon-carbon bonds, such as acetate, pyruvate, propane, and succinate. Here we report the full genome sequence of this bacterium.

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Mesh：

Year:  2010        PMID： 20472789      PMCID： PMC2897342          DOI： 10.1128/JB.00506-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map.

Authors:  T Chung; D J Klumpp; D C LaPorte
Journal:  J Bacteriol       Date:  1988-01       Impact factor: 3.490

2.  Methylocella species are facultatively methanotrophic.

Authors:  Svetlana N Dedysh; Claudia Knief; Peter F Dunfield
Journal:  J Bacteriol       Date:  2005-07       Impact factor: 3.490

3.  Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2.

Authors:  Andreas R Theisen; M Hanif Ali; Stefan Radajewski; Marc G Dumont; Peter F Dunfield; Ian R McDonald; Svetlana N Dedysh; Carlos B Miguez; J Colin Murrell
Journal:  Mol Microbiol       Date:  2005-11       Impact factor: 3.501

4.  Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol.

Authors:  Peter F Dunfield; Valentina N Khmelenina; Natalia E Suzina; Yuri A Trotsenko; Svetlana N Dedysh
Journal:  Int J Syst Evol Microbiol       Date:  2003-09       Impact factor: 2.747

5.  Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).

Authors:  Naomi Ward; Øivind Larsen; James Sakwa; Live Bruseth; Hoda Khouri; A Scott Durkin; George Dimitrov; Lingxia Jiang; David Scanlan; Katherine H Kang; Matt Lewis; Karen E Nelson; Barbara Methé; Martin Wu; John F Heidelberg; Ian T Paulsen; Derrick Fouts; Jacques Ravel; Hervé Tettelin; Qinghu Ren; Tim Read; Robert T DeBoy; Rekha Seshadri; Steven L Salzberg; Harald B Jensen; Nils Kåre Birkeland; William C Nelson; Robert J Dodson; Svenn H Grindhaug; Ingeborg Holt; Ingvar Eidhammer; Inge Jonasen; Susan Vanaken; Terry Utterback; Tamara V Feldblyum; Claire M Fraser; Johan R Lillehaug; Jonathan A Eisen
Journal:  PLoS Biol       Date:  2004-09-21       Impact factor: 8.029

6.  Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.

Authors:  Shaobin Hou; Kira S Makarova; Jimmy H W Saw; Pavel Senin; Benjamin V Ly; Zhemin Zhou; Yan Ren; Jianmei Wang; Michael Y Galperin; Marina V Omelchenko; Yuri I Wolf; Natalya Yutin; Eugene V Koonin; Matthew B Stott; Bruce W Mountain; Michelle A Crowe; Angela V Smirnova; Peter F Dunfield; Lu Feng; Lei Wang; Maqsudul Alam
Journal:  Biol Direct       Date:  2008-07-01       Impact factor: 4.540
  6 in total
  33 in total

Review 1.  Architecture and active site of particulate methane monooxygenase.

Authors:  Megen A Culpepper; Amy C Rosenzweig
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-06-23       Impact factor: 8.250

2.  Autotrophic methanotrophy in verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation.

Authors:  Ahmad F Khadem; Arjan Pol; Adam Wieczorek; Seyed S Mohammadi; Kees-Jan Francoijs; Henk G Stunnenberg; Mike S M Jetten; Huub J M Op den Camp
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

3.  Autotrophic carbon dioxide fixation via the Calvin-Benson-Bassham cycle by the denitrifying methanotroph "Candidatus Methylomirabilis oxyfera".

Authors:  Olivia Rasigraf; Dorien M Kool; Mike S M Jetten; Jaap S Sinninghe Damsté; Katharina F Ettwig
Journal:  Appl Environ Microbiol       Date:  2014-02-07       Impact factor: 4.792

4.  Complete sequence analysis of two methanotroph-specific repABC-containing plasmids from Methylocystis sp. strain SC2.

Authors:  Bomba Dam; Michael Kube; Somasri Dam; Richard Reinhardt; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2012-04-13       Impact factor: 4.792

Review 5.  Biocatalysts for methane conversion: big progress on breaking a small substrate.

Authors:  Thomas J Lawton; Amy C Rosenzweig
Journal:  Curr Opin Chem Biol       Date:  2016-10-18       Impact factor: 8.822

6.  Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b.

Authors:  Lisa Y Stein; Sukhwan Yoon; Jeremy D Semrau; Alan A Dispirito; Andrew Crombie; J Colin Murrell; Stéphane Vuilleumier; Marina G Kalyuzhnaya; Huub J M Op den Camp; Françoise Bringel; D Bruce; J-F Cheng; A Copeland; Lynne Goodwin; Shunsheng Han; Loren Hauser; Mike S M Jetten; Aurélie Lajus; M L Land; A Lapidus; S Lucas; Claudine Médigue; S Pitluck; Tanja Woyke; Ahmet Zeytun; Martin G Klotz
Journal:  J Bacteriol       Date:  2010-10-15       Impact factor: 3.490

7.  Trace-gas metabolic versatility of the facultative methanotroph Methylocella silvestris.

Authors:  Andrew T Crombie; J Colin Murrell
Journal:  Nature       Date:  2014-04-28       Impact factor: 49.962

Review 8.  Methane-Oxidizing Enzymes: An Upstream Problem in Biological Gas-to-Liquids Conversion.

Authors:  Thomas J Lawton; Amy C Rosenzweig
Journal:  J Am Chem Soc       Date:  2016-07-19       Impact factor: 15.419

9.  The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis.

Authors:  Ivica Tamas; Angela V Smirnova; Zhiguo He; Peter F Dunfield
Journal:  ISME J       Date:  2013-08-29       Impact factor: 10.302

10.  Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.

Authors:  Ahmad F Khadem; Adam S Wieczorek; Arjan Pol; Stéphane Vuilleumier; Harry R Harhangi; Peter F Dunfield; Marina G Kalyuzhnaya; J Colin Murrell; Kees-Jan Francoijs; Henk G Stunnenberg; Lisa Y Stein; Alan A DiSpirito; Jeremy D Semrau; Aurélie Lajus; Claudine Médigue; Martin G Klotz; Mike S M Jetten; Huub J M Op den Camp
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490
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