Literature DB >> 21441518

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

Lisa Y Stein1, Françoise Bringel, Alan A DiSpirito, Sukkyun Han, Mike S M Jetten, Marina G Kalyuzhnaya, K Dimitri Kits, Martin G Klotz, Huub J M Op den Camp, Jeremy D Semrau, Stéphane Vuilleumier, David C Bruce, Jan-Fang Cheng, Karen W Davenport, Lynne Goodwin, Shunsheng Han, Loren Hauser, Aurélie Lajus, Miriam L Land, Alla Lapidus, Susan Lucas, Claudine Médigue, Sam Pitluck, Tanja Woyke.   

Abstract

Methylocystis sp. strain Rockwell (ATCC 49242) is an aerobic methane-oxidizing alphaproteobacterium isolated from an aquifer in southern California. Unlike most methanotrophs in the Methylocystaceae family, this strain has a single pmo operon encoding particulate methane monooxygenase but no evidence of the genes encoding soluble methane monooxygenase. This is the first reported genome sequence of a member of the Methylocystis species of the Methylocystaceae family in the order Rhizobiales.

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Year:  2011        PMID： 21441518      PMCID： PMC3133158          DOI： 10.1128/JB.00278-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

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2.  Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

Authors:  Yin Chen; Marc G Dumont; Josh D Neufeld; Levente Bodrossy; Nancy Stralis-Pavese; Niall P McNamara; Nick Ostle; Maria J I Briones; J Colin Murrell
Journal:  Environ Microbiol       Date:  2008-07-10       Impact factor: 5.491

3.  A comparison of methanobactins from Methylosinus trichosporium OB3b and Methylocystis strain Sb2 predicts methanobactins are synthesized from diverse peptide precursors modified to create a common core for binding and reducing copper ions.

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Journal:  Biochemistry       Date:  2010-11-04       Impact factor: 3.162

4.  Field application of nitrogen and phenylacetylene to mitigate greenhouse gas emissions from landfill cover soils: effects on microbial community structure.

Authors:  Jeongdae Im; Sung-Woo Lee; Levente Bodrossy; Michael J Barcelona; Jeremy D Semrau
Journal:  Appl Microbiol Biotechnol       Date:  2010-08-31       Impact factor: 4.813

5.  Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b.

Authors:  Lisa Y Stein; Sukhwan Yoon; Jeremy D Semrau; Alan A Dispirito; Andrew Crombie; J Colin Murrell; Stéphane Vuilleumier; Marina G Kalyuzhnaya; Huub J M Op den Camp; Françoise Bringel; D Bruce; J-F Cheng; A Copeland; Lynne Goodwin; Shunsheng Han; Loren Hauser; Mike S M Jetten; Aurélie Lajus; M L Land; A Lapidus; S Lucas; Claudine Médigue; S Pitluck; Tanja Woyke; Ahmet Zeytun; Martin G Klotz
Journal:  J Bacteriol       Date:  2010-10-15       Impact factor: 3.490

6.  Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation.

Authors:  Lisa Y Stein; Daniel J Arp; Paul M Berube; Patrick S G Chain; Loren Hauser; Mike S M Jetten; Martin G Klotz; Frank W Larimer; Jeanette M Norton; Huub J M Op den Camp; Maria Shin; Xueming Wei
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7.  Microaerobic and anaerobic metabolism of a Methylocystis parvus strain isolated from a denitrifying bioreactor.

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8.  Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

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9.  Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-15       Impact factor: 11.205

Review 10.  Type IV secretion systems: versatility and diversity in function.

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Journal:  Cell Microbiol       Date:  2010-07-16       Impact factor: 3.715
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  17 in total

Review 1.  Architecture and active site of particulate methane monooxygenase.

Authors:  Megen A Culpepper; Amy C Rosenzweig
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2.  Microbial minorities modulate methane consumption through niche partitioning.

Authors:  Paul L E Bodelier; Marion Meima-Franke; Cornelis A Hordijk; Anne K Steenbergh; Mariet M Hefting; Levente Bodrossy; Martin von Bergen; Jana Seifert
Journal:  ISME J       Date:  2013-06-20       Impact factor: 10.302

3.  Genome sequence of the methanotrophic poly-β-hydroxybutyrate producer Methylocystis parvus OBBP.

Authors:  Carlos del Cerro; Jesús M García; Antonia Rojas; Marta Tortajada; Daniel Ramón; Beatriz Galán; María A Prieto; José L García
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4.  Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol.

Authors:  Alexey Vorobev; Sheeja Jagadevan; Sunit Jain; Karthik Anantharaman; Gregory J Dick; Stéphane Vuilleumier; Jeremy D Semrau
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5.  Complete sequence analysis of two methanotroph-specific repABC-containing plasmids from Methylocystis sp. strain SC2.

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6.  Biological conversion of propane to 2-propanol using group I and II methanotrophs as biocatalysts.

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7.  The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis.

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8.  Variations in methanobactin structure influences copper utilization by methane-oxidizing bacteria.

Authors:  Abdelnasser El Ghazouani; Arnaud Baslé; Joe Gray; David W Graham; Susan J Firbank; Christopher Dennison
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-10       Impact factor: 11.205

Review 9.  Biochemistry of aerobic biological methane oxidation.

Authors:  Christopher W Koo; Amy C Rosenzweig
Journal:  Chem Soc Rev       Date:  2021-01-25       Impact factor: 54.564

10.  A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.

Authors:  David A C Beck; Marina G Kalyuzhnaya; Stephanie Malfatti; Susannah G Tringe; Tijana Glavina Del Rio; Natalia Ivanova; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  PeerJ       Date:  2013-02-19       Impact factor: 2.984
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