Literature DB >> 23799370

Biopsies: next-generation biospecimens for tailoring therapy.

Mark Basik1, Adriana Aguilar-Mahecha, Caroline Rousseau, Zuanel Diaz, Sabine Tejpar, Alan Spatz, Celia M T Greenwood, Gerald Batist.   

Abstract

The majority of samples in existing tumour biobanks are surgical specimens of primary tumours. Insights into tumour biology, such as intratumoural heterogeneity, tumour-host crosstalk, and the evolution of the disease during therapy, require biospecimens from the primary tumour and those that reflect the patient's disease in specific contexts. Next-generation 'omics' technologies facilitate deep interrogation of tumours, but the characteristics of the samples can determine the ultimate accuracy of the results. The challenge is to biopsy tumours, in some cases serially over time, ensuring that the samples are representative, viable, and adequate both in quantity and quality for subsequent molecular applications. The collection of next-generation biospecimens, tumours, and blood samples at defined time points during the disease trajectory--either for discovery research or to guide clinical decisions--presents additional challenges and opportunities. From an organizational perspective, it also requires new additions to the multidisciplinary therapeutic team, notably interventional radiologists, molecular pathologists, and bioinformaticians. In this Review, we describe the existing procedures for sample procurement and processing of next-generation biospecimens, and highlight the issues involved in this endeavour, including the ethical, logistical, scientific, informational, and financial challenges accompanying next-generation biobanking.

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Mesh:

Year:  2013        PMID: 23799370     DOI: 10.1038/nrclinonc.2013.101

Source DB:  PubMed          Journal:  Nat Rev Clin Oncol        ISSN: 1759-4774            Impact factor:   66.675


  126 in total

1.  Cancer: Genomics of metastasis.

Authors:  Joe Gray
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

Review 2.  Disclosure of individual genetic data to research participants: the debate reconsidered.

Authors:  Annelien L Bredenoord; Hester Y Kroes; Edwin Cuppen; Michael Parker; Johannes J M van Delden
Journal:  Trends Genet       Date:  2010-12-27       Impact factor: 11.639

Review 3.  The ethical use of mandatory research biopsies.

Authors:  Erin M Olson; Nancy U Lin; Ian E Krop; Eric P Winer
Journal:  Nat Rev Clin Oncol       Date:  2011-08-02       Impact factor: 66.675

4.  Biospecimen reporting for improved study quality (BRISQ).

Authors:  Helen M Moore; Andrea B Kelly; Scott D Jewell; Lisa M McShane; Douglas P Clark; Renata Greenspan; Daniel F Hayes; Pierre Hainaut; Paula Kim; Elizabeth A Mansfield; Olga Potapova; Peter Riegman; Yaffa Rubinstein; Edward Seijo; Stella Somiari; Peter Watson; Heinz-Ulrich Weier; Claire Zhu; Jim Vaught
Journal:  Cancer Cytopathol       Date:  2011-03-22       Impact factor: 5.284

5.  International approaches to advancing biospecimen science.

Authors:  Helen M Moore; Carolyn C Compton; Joseph Alper; Jimmie B Vaught
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2011-03-23       Impact factor: 4.254

6.  Heterogeneity of kinase inhibitor resistance mechanisms in GIST.

Authors:  B Liegl; I Kepten; C Le; M Zhu; G D Demetri; M C Heinrich; C D M Fletcher; C L Corless; J A Fletcher
Journal:  J Pathol       Date:  2008-09       Impact factor: 7.996

7.  Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling.

Authors:  Yinyin Yuan; Henrik Failmezger; Oscar M Rueda; H Raza Ali; Stefan Gräf; Suet-Feung Chin; Roland F Schwarz; Christina Curtis; Mark J Dunning; Helen Bardwell; Nicola Johnson; Sarah Doyle; Gulisa Turashvili; Elena Provenzano; Sam Aparicio; Carlos Caldas; Florian Markowetz
Journal:  Sci Transl Med       Date:  2012-10-24       Impact factor: 17.956

8.  Computational dissection of tissue contamination for identification of colon cancer-specific expression profiles.

Authors:  Ozlem Türeci; Jiayi Ding; Holly Hilton; Hongjin Bian; Hitomi Ohkawa; Michael Braxenthaler; Gerhard Seitz; Laura Raddrizzani; Helmut Friess; Markus Buchler; Ugur Sahin; Juergen Hammer
Journal:  FASEB J       Date:  2003-03       Impact factor: 5.191

9.  Intra- and inter-tumor heterogeneity of BRAF(V600E))mutations in primary and metastatic melanoma.

Authors:  Molly Yancovitz; Adam Litterman; Joanne Yoon; Elise Ng; Richard L Shapiro; Russell S Berman; Anna C Pavlick; Farbod Darvishian; Paul Christos; Madhu Mazumdar; Iman Osman; David Polsky
Journal:  PLoS One       Date:  2012-01-03       Impact factor: 3.240

10.  RNA quality in frozen breast cancer samples and the influence on gene expression analysis--a comparison of three evaluation methods using microcapillary electrophoresis traces.

Authors:  Carina Strand; Johan Enell; Ingrid Hedenfalk; Mårten Fernö
Journal:  BMC Mol Biol       Date:  2007-05-22       Impact factor: 2.946

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  41 in total

1.  Image-Guided Biopsy in the Era of Personalized Cancer Care: Proceedings from the Society of Interventional Radiology Research Consensus Panel.

Authors:  Alda L Tam; Howard J Lim; Ignacio I Wistuba; Anobel Tamrazi; Michael D Kuo; Etay Ziv; Stephen Wong; Albert J Shih; Robert J Webster; Gregory S Fischer; Sunitha Nagrath; Suzanne E Davis; Sarah B White; Kamran Ahrar
Journal:  J Vasc Interv Radiol       Date:  2015-11-25       Impact factor: 3.464

2.  Epidemiology: Biorepositories for cancer research in developing countries.

Authors:  Sandipan Ray; Aliasgar Moiyadi; Sanjeeva Srivastava
Journal:  Nat Rev Clin Oncol       Date:  2013-07-09       Impact factor: 66.675

Review 3.  Nano-plasmonic exosome diagnostics.

Authors:  Hyungsoon Im; Huilin Shao; Ralph Weissleder; Cesar M Castro; Hakho Lee
Journal:  Expert Rev Mol Diagn       Date:  2015-05-02       Impact factor: 5.225

4.  Analyses of Intravesicular Exosomal Proteins Using a Nano-Plasmonic System.

Authors:  Jongmin Park; Hyungsoon Im; Seonki Hong; Cesar M Castro; Ralph Weissleder; Hakho Lee
Journal:  ACS Photonics       Date:  2017-11-03       Impact factor: 7.529

5.  The identification of challenges in tissue collection for biomarker studies: the Q-CROC-03 neoadjuvant breast cancer translational trial experience.

Authors:  Adriana Aguilar-Mahecha; Josiane Lafleur; Manuela Pelmus; Carole Seguin; Cathy Lan; Federico Discepola; Bojan Kovacina; Rosa Christodoulopoulos; Ombretta Salvucci; Catalin Mihalcioiu; Josée-Anne Roy; André Robidoux; Elizabeth A Marcus; Gerald Batist; Mark Basik
Journal:  Mod Pathol       Date:  2017-07-28       Impact factor: 7.842

Review 6.  The Importance of Biopsy in the Era of Molecular Medicine.

Authors:  Etay Ziv; Jeremy C Durack; Stephen B Solomon
Journal:  Cancer J       Date:  2016 Nov/Dec       Impact factor: 3.360

7.  Cancer cell profiling by barcoding allows multiplexed protein analysis in fine-needle aspirates.

Authors:  Adeeti V Ullal; Vanessa Peterson; Sarit S Agasti; Suan Tuang; Dejan Juric; Cesar M Castro; Ralph Weissleder
Journal:  Sci Transl Med       Date:  2014-01-15       Impact factor: 17.956

8.  What Can Be Done to Improve Research Biopsy Quality in Oncology Clinical Trials?

Authors:  Katherine V Ferry-Galow; Vivekananda Datta; Hala R Makhlouf; John Wright; Bradford J Wood; Elliot Levy; Etta D Pisano; Alda L Tam; Susanna I Lee; Umar Mahmood; Lawrence V Rubinstein; James H Doroshow; Alice P Chen
Journal:  J Oncol Pract       Date:  2018-10-04       Impact factor: 3.840

Review 9.  Bioinformatic approaches to augment study of epithelial-to-mesenchymal transition in lung cancer.

Authors:  Tim N Beck; Adaeze J Chikwem; Nehal R Solanki; Erica A Golemis
Journal:  Physiol Genomics       Date:  2014-08-05       Impact factor: 3.107

10.  Prospective Randomized Trial for Image-Guided Biopsy Using Cone-Beam CT Navigation Compared with Conventional CT.

Authors:  Nadine Abi-Jaoudeh; Teresa Fisher; John Jacobus; Marlene Skopec; Alessandro Radaelli; Imramsjah Martijn Van Der Bom; Robert Wesley; Bradford J Wood
Journal:  J Vasc Interv Radiol       Date:  2016-07-25       Impact factor: 3.464

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