Literature DB >> 20939497

Conformational changes in the g protein-coupled receptor rhodopsin revealed by histidine hydrogen-deuterium exchange.

David T Lodowski1, Krzysztof Palczewski, Masaru Miyagi.   

Abstract

G protein-coupled receptors (GPCRs) are activated by ligand binding, allowing extracellular signals to be efficiently transmitted through the membrane to the G protein recognition site, 40 Å away. Utilizing His residues found spaced throughout the GPCR, rhodopsin, we used His hydrogen-deuterium exchange (His-HDX) to monitor long-time scale structural rearrangements previously inaccessible by other means. The half-lives of His-HDX indicate clear differences in the solvent accessibility of three His residues in rhodopsin/opsin and Zn2+-dependent changes in the pKa for His195. These results indicate the utility of His-HDX in examining structural rearrangements in native source and membrane proteins without requiring structural modification.

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Year:  2010        PMID: 20939497      PMCID: PMC3075965          DOI: 10.1021/bi101502v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Stabilizing effect of Zn2+ in native bovine rhodopsin.

Authors:  Paul S-H Park; K Tanuj Sapra; Michał Koliński; Sławomir Filipek; Krzysztof Palczewski; Daniel J Muller
Journal:  J Biol Chem       Date:  2007-02-15       Impact factor: 5.157

2.  Crystal structure of the ligand-free G-protein-coupled receptor opsin.

Authors:  Jung Hee Park; Patrick Scheerer; Klaus Peter Hofmann; Hui-Woog Choe; Oliver Peter Ernst
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

Review 3.  Activation of G protein-coupled receptors: beyond two-state models and tertiary conformational changes.

Authors:  Paul S-H Park; David T Lodowski; Krzysztof Palczewski
Journal:  Annu Rev Pharmacol Toxicol       Date:  2008       Impact factor: 13.820

4.  Conformational analysis of membrane proteins in phospholipid bilayer nanodiscs by hydrogen exchange mass spectrometry.

Authors:  Christine M Hebling; Christopher R Morgan; Darrel W Stafford; James W Jorgenson; Kasper D Rand; John R Engen
Journal:  Anal Chem       Date:  2010-07-01       Impact factor: 6.986

5.  Crystal structure of opsin in its G-protein-interacting conformation.

Authors:  Patrick Scheerer; Jung Hee Park; Peter W Hildebrand; Yong Ju Kim; Norbert Krauss; Hui-Woog Choe; Klaus Peter Hofmann; Oliver P Ernst
Journal:  Nature       Date:  2008-09-25       Impact factor: 49.962

6.  Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange.

Authors:  Xi Zhang; Ellen Y T Chien; Michael J Chalmers; Bruce D Pascal; Jovylyn Gatchalian; Raymond C Stevens; Patrick R Griffin
Journal:  Anal Chem       Date:  2010-02-01       Impact factor: 6.986

7.  Critical role of transmembrane segment zinc binding in the structure and function of rhodopsin.

Authors:  Aleksandar Stojanovic; Jeremiah Stitham; John Hwa
Journal:  J Biol Chem       Date:  2004-06-12       Impact factor: 5.157

8.  Structural waters define a functional channel mediating activation of the GPCR, rhodopsin.

Authors:  Thomas E Angel; Sayan Gupta; Beata Jastrzebska; Krzysztof Palczewski; Mark R Chance
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-13       Impact factor: 11.205

9.  Histidine residues regulate the transition of photoexcited rhodopsin to its active conformation, metarhodopsin II.

Authors:  C J Weitz; J Nathans
Journal:  Neuron       Date:  1992-03       Impact factor: 17.173

10.  Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation.

Authors:  Shivani Ahuja; Viktor Hornak; Elsa C Y Yan; Natalie Syrett; Joseph A Goncalves; Amiram Hirshfeld; Martine Ziliox; Thomas P Sakmar; Mordechai Sheves; Philip J Reeves; Steven O Smith; Markus Eilers
Journal:  Nat Struct Mol Biol       Date:  2009-02-01       Impact factor: 15.369

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  10 in total

Review 1.  Structural approaches to understanding retinal proteins needed for vision.

Authors:  Tivadar Orban; Beata Jastrzebska; Krzysztof Palczewski
Journal:  Curr Opin Cell Biol       Date:  2013-11-28       Impact factor: 8.382

2.  Revealing the architecture of protein complexes by an orthogonal approach combining HDXMS, CXMS, and disulfide trapping.

Authors:  Kunhong Xiao; Yang Zhao; Minjung Choi; Hongda Liu; Adi Blanc; Jiang Qian; Thomas J Cahill; Xue Li; Yunfang Xiao; Lisa J Clark; Sheng Li
Journal:  Nat Protoc       Date:  2018-05-24       Impact factor: 13.491

Review 3.  Structure-function of the G protein-coupled receptor superfamily.

Authors:  Vsevolod Katritch; Vadim Cherezov; Raymond C Stevens
Journal:  Annu Rev Pharmacol Toxicol       Date:  2012-11-08       Impact factor: 13.820

4.  Imidazole C-2 hydrogen/deuterium exchange reaction at histidine for probing protein structure and function with matrix-assisted laser desorption ionization mass spectrometry.

Authors:  Naoka Hayashi; Hiroki Kuyama; Chihiro Nakajima; Kazuki Kawahara; Masaru Miyagi; Osamu Nishimura; Hisayuki Matsuo; Takashi Nakazawa
Journal:  Biochemistry       Date:  2014-03-14       Impact factor: 3.162

5.  Role of bulk water in hydrolysis of the rhodopsin chromophore.

Authors:  Beata Jastrzebska; Krzysztof Palczewski; Marcin Golczak
Journal:  J Biol Chem       Date:  2011-04-01       Impact factor: 5.157

6.  Quantitative measurement of the solvent accessibility of histidine imidazole groups in proteins.

Authors:  Vennela Mullangi; Xiang Zhou; David W Ball; David J Anderson; Masaru Miyagi
Journal:  Biochemistry       Date:  2012-08-28       Impact factor: 3.162

Review 7.  From atomic structures to neuronal functions of g protein-coupled receptors.

Authors:  Krzysztof Palczewski; Tivadar Orban
Journal:  Annu Rev Neurosci       Date:  2013-05-15       Impact factor: 12.449

8.  Histidine hydrogen-deuterium exchange mass spectrometry for probing the microenvironment of histidine residues in dihydrofolate reductase.

Authors:  Masaru Miyagi; Qun Wan; Md Faiz Ahmad; Giridharan Gokulrangan; Sara E Tomechko; Brad Bennett; Chris Dealwis
Journal:  PLoS One       Date:  2011-02-16       Impact factor: 3.240

9.  PAR4 activation involves extracellular loop 3 and transmembrane residue Thr153.

Authors:  Xu Han; Lukas Hofmann; Maria de la Fuente; Nathan Alexander; Krzysztof Palczewski; Marvin T Nieman
Journal:  Blood       Date:  2020-11-05       Impact factor: 25.476

10.  Detection of structural and conformational changes in ALS-causing mutant profilin-1 with hydrogen/deuterium exchange mass spectrometry and bioinformatics techniques.

Authors:  Ahmad Shahir Sadr; Zahra Abdollahpour; Atousa Aliahmadi; Changiz Eslahchi; Mina Nekouei; Lily Kiaei; Mahmoud Kiaei; Alireza Ghassempour
Journal:  Metab Brain Dis       Date:  2021-07-24       Impact factor: 3.655

  10 in total

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