| Literature DB >> 20937089 |
Yu-Huei Liu1, Cheng-Hsu Chen, Shih-Yin Chen, Ying-Ju Lin, Wen-Ling Liao, Chang-Hai Tsai, Lei Wan, Fuu-Jen Tsai.
Abstract
BACKGROUND: Idiopathic membranous nephropathy (IMN) is one of the most common forms of autoimmune nephritic syndrome in adults. The purpose of this study is to evaluate whether polymorphisms of PLA2R1 affect the development of IMN.Entities:
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Year: 2010 PMID: 20937089 PMCID: PMC2959017 DOI: 10.1186/1423-0127-17-81
Source DB: PubMed Journal: J Biomed Sci ISSN: 1021-7770 Impact factor: 8.410
Figure 1Identification of . (A) HpyCH4III restriction enzyme digestion of the intron region at rs6757188. Lanes 1: DNA from an individual homozygous for the polymorphic allele of T/T. Lane 2: DNA from an individual homozygous for the polymorphic allele of C/T. Lane 3: DNA from an individual heterozygous for the polymorphic allele of C/C. (B) BbsI restriction enzyme digestion of the exon region at rs35771982. Lane 1: DNA from an individual homozygous for the polymorphic allele of C/C. Lane 2: DNA from an individual homozygous for the polymorphic allele of C/G. Lane 3: DNA from an individual heterozygous for the polymorphic allele of G/G.
Genotype and allele frequencies of phospholipase A2 receptor 1 (PLA2R1) single nucleotide polymorphisms (SNPs) in patients with idiopathic membranous nephropathy (IMN) vs healthy controls
| SNPs | Controls | IMN | ||
|---|---|---|---|---|
| rs6757188 | ||||
| 76 (35.8) | 83 (32.3) | 0.402 | 1 | |
| 136 (64.2) | 175 (67.8) | 1.178 (0.803-1.729) | ||
| Total | 212 (100) | 258 (100) | ||
| rs35771982 | ||||
| 56 (26.4) | 41 (15.9) | 0.005 | 1 | |
| 156 (73.6) | 217 (84.1) | 1.900 (1.209-2.987) | ||
| Total | 212 (100) | 258 (100) | ||
| rs6757188 | ||||
| 9 (8.5) | 15 (11.6) | 0.113 | 1 | |
| 58 (54.7) | 53 (41.1) | 0.548 (0.221-1.357) | ||
| 39 (36.8) | 61 (47.3) | 0.938 (0.374-2.352) | ||
| Total | 106 (100) | 129 (100) | ||
| rs35771982 | ||||
| 8 (7.5) | 2 (1.6) | 0.015 | 1 | |
| 40 (37.7) | 37 (28.7) | 3.700 (0.738-18.560) | ||
| 58 (54.7) | 90 (69.7) | 6.207 (1.273-30.262) | ||
| Total | 106 (100) | 129 (100) | ||
Abbreviation: CI, confidence interval.
a Genotype frequencies were determined by χ2 test using 2 × 3 contingency tables between patients with IMN and healthy controls. Allele frequencies and restricted genotypes were determined by χ2 test using 2 × 2 contingency tables between patients with IMN and healthy controls.
b Odds ratios and 95% CI per genotype and allele were estimated by applying unconditional logistic regression between patients with IMN and healthy controls.
Haplotypes according to the presence of phospholipase A2 receptor 1 (PLA2R1) single nucleotide polymorphisms (SNPs) in patients with idiopathic membranous nephropathy (IMN) vs healthy controls
| Polymorphisms | Controls | IMN | ||
|---|---|---|---|---|
| H1- | 84 (39.6) | 134 (51.9) | 0.004b | 1.647 (1.140-2.379) |
| H2- | 72 (34.0) | 83 (32.2) | 0.922 (0.627-1.357) | |
| H3- | 52 (24.5) | 41 (15.9) | 0.581 (0.368-0.919) | |
| H4- | 4 (1.9) | 0 (0.0) | 0.005 (0.000-) | |
| H1/H1 + H1/nonH1 | 0.023c | |||
| H1/H1 | 17 (16.0) | 35 (27.1) | 0.031d | 2.676 (1.264-5.665) |
| H1/nonH1 | 54 (47.2) | 64 (49.6) | 1.664 (0.911-3.041) | |
| nonH1/nonH1 | 39 (36.8) | 30 (23.3) | 1 | |
| H2/H2 + H2/nonH2 | 64 (60.4) | 68 (52.7) | 0.239c | |
| H2/H2 | 8 (7.5) | 15 (11.6) | 0.174d | 2.676 (1.264-5.665) |
| H2/nonH2 | 56 (52.8) | 53 (41.1) | 1.664 (0.911-3.041) | |
| nonH2/nonH2 | 42 (39.6) | 61 (47.3) | 1 | |
| H3/H3 + H3/nonH3 | 47 (44.3) | 39 (30.2) | 0.025c | 0.544 (0.318-0.930) |
| H3/H3 | 5 (4.7) | 2 (1.6) | 0.053d | 0.262 (0.049-1.396) |
| H3/nonH3 | 42 (39.6) | 37 (28.7) | 0.578 (0.333-1.002) | |
| nonH3/nonH3 | 59 (55.7) | 90 (69.8) | 1 | |
| H4/H4 + H4/nonH4 | 4 (3.8) | 0 (0.0) | 0.026c | 0.000 (0.000-) |
| H4/H4 | 0 (0.0) | 0 (0.0) | 0.026d | -- |
| H4/nonH4 | 4 (3.8) | 0 (0.0) | 0.000 (0.000-) | |
| nonH4/nonH4 | 102 (96.2) | 129 (100.0) | 1 | |
Abbreviations: CI, confidence interval; H, haplotype.
a Order of SNPs comprising the PLA2R1 haplotypes: rs6757188, and rs35771982. The haplotypes were identified by the Baysian statistical method available in the program Phase 2.1.
b The significance of haplotype frequency for IMN development was determined by chi-square test using 4 × 2 contingency tables.
c Individual haplotype frequencies for IMN development were determined by chi-square test using 2 × 2 contingency tables.
d The significance of diplotype frequency for IMN development were determined by chi-square test using 3 × 2 contingency tables.
e Odds ratios and 95% CI per haplotype or diplotype were estimated by applying unconditional logistic regression between patients with IMN and healthy controls.
Figure 2Risk polymorphism, risk haplotype and protective haplotype of . (A) Survival without ESRF/death of individuals with or without the risk G allele at rs35771982 of PLA2R1 (log rank significance: 0.74). (B) Survival without ESRF/death of individuals with or without the risk haplotype 1 of PLA2R1 (log rank significance: 0.77). (C) Survival without ESRF/death of individuals with or without the protective haplotype 3 of PLA2R1 (log rank significance: 0.70).