Literature DB >> 20935486

CpG island chromatin: a platform for gene regulation.

Neil P Blackledge1, Robert Klose.   

Abstract

The majority of mammalian gene promoters are encompassed within regions of the genome called CpG islands that have an elevated level of non-methylated CpG dinucleotides. Despite over 20 years of study, the precise mechanisms by which CpG islands contribute to regulatory element function remain poorly understood. Recently it has been demonstrated that specific histone modifying enzymes are recruited directly to CpG islands through recognition of non-methylated CpG dinucleotide sequence. These enzymes then impose unique chromatin architecture on CpG islands that distinguish them from the surrounding genome. In the context of this work we discuss how CpG island elements may contribute to the function of gene regulatory elements through the utilization of chromatin and epigenetic processes.

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Year:  2011        PMID: 20935486      PMCID: PMC3278783          DOI: 10.4161/epi.6.2.13640

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  62 in total

1.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

2.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

3.  Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription.

Authors:  G E Croston; L A Kerrigan; L M Lira; D R Marshak; J T Kadonaga
Journal:  Science       Date:  1991-02-08       Impact factor: 47.728

4.  Histone demethylation by a family of JmjC domain-containing proteins.

Authors:  Yu-ichi Tsukada; Jia Fang; Hediye Erdjument-Bromage; Maria E Warren; Christoph H Borchers; Paul Tempst; Yi Zhang
Journal:  Nature       Date:  2005-12-18       Impact factor: 49.962

5.  Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs.

Authors:  R R Meehan; J D Lewis; S McKay; E L Kleiner; A P Bird
Journal:  Cell       Date:  1989-08-11       Impact factor: 41.582

6.  CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex.

Authors:  Jeong-Heon Lee; David G Skalnik
Journal:  J Biol Chem       Date:  2005-10-26       Impact factor: 5.157

7.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

8.  The Polycomb group protein EZH2 directly controls DNA methylation.

Authors:  Emmanuelle Viré; Carmen Brenner; Rachel Deplus; Loïc Blanchon; Mario Fraga; Céline Didelot; Lluis Morey; Aleyde Van Eynde; David Bernard; Jean-Marie Vanderwinden; Mathieu Bollen; Manel Esteller; Luciano Di Croce; Yvan de Launoit; François Fuks
Journal:  Nature       Date:  2005-12-14       Impact factor: 49.962

9.  Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci.

Authors:  Mario Renda; Ilaria Baglivo; Bonnie Burgess-Beusse; Sabrina Esposito; Roberto Fattorusso; Gary Felsenfeld; Paolo V Pedone
Journal:  J Biol Chem       Date:  2007-09-07       Impact factor: 5.157

Review 10.  Mammalian RNA polymerase II core promoters: insights from genome-wide studies.

Authors:  Albin Sandelin; Piero Carninci; Boris Lenhard; Jasmina Ponjavic; Yoshihide Hayashizaki; David A Hume
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

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  52 in total

Review 1.  CpG islands and the regulation of transcription.

Authors:  Aimée M Deaton; Adrian Bird
Journal:  Genes Dev       Date:  2011-05-15       Impact factor: 11.361

Review 2.  Histone H2A Monoubiquitination in Neurodevelopmental Disorders.

Authors:  Anshika Srivastava; Brian McGrath; Stephanie L Bielas
Journal:  Trends Genet       Date:  2017-06-29       Impact factor: 11.639

Review 3.  Targeting Polycomb systems to regulate gene expression: modifications to a complex story.

Authors:  Neil P Blackledge; Nathan R Rose; Robert J Klose
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-30       Impact factor: 94.444

Review 4.  Epigenetic programming of hypoxic-ischemic encephalopathy in response to fetal hypoxia.

Authors:  Qingyi Ma; Lubo Zhang
Journal:  Prog Neurobiol       Date:  2014-11-11       Impact factor: 11.685

Review 5.  DNA methylation: TET proteins-guardians of CpG islands?

Authors:  Kristine Williams; Jesper Christensen; Kristian Helin
Journal:  EMBO Rep       Date:  2011-12-23       Impact factor: 8.807

6.  Recognition of CpG island chromatin by KDM2A requires direct and specific interaction with linker DNA.

Authors:  Jin C Zhou; Neil P Blackledge; Anca M Farcas; Robert J Klose
Journal:  Mol Cell Biol       Date:  2011-11-14       Impact factor: 4.272

Review 7.  Targeted cancer therapy: giving histone deacetylase inhibitors all they need to succeed.

Authors:  Berkley E Gryder; Quaovi H Sodji; Adegboyega K Oyelere
Journal:  Future Med Chem       Date:  2012-03       Impact factor: 3.808

8.  Genetic and epigenetic determinants mediate proneness of oncogene breakpoint sites for involvement in TCR translocations.

Authors:  N S D Larmonie; A van der Spek; A J J C Bogers; J J M van Dongen; A W Langerak
Journal:  Genes Immun       Date:  2013-12-05       Impact factor: 2.676

9.  Safer, silencing-resistant lentiviral vectors: optimization of the ubiquitous chromatin-opening element through elimination of aberrant splicing.

Authors:  Sean Knight; Fang Zhang; Uta Mueller-Kuller; Marieke Bokhoven; Abhinav Gupta; Thomas Broughton; Sha Sha; Michael N Antoniou; Christian Brendel; Manuel Grez; Adrian J Thrasher; Mary Collins; Yasuhiro Takeuchi
Journal:  J Virol       Date:  2012-06-13       Impact factor: 5.103

10.  Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells.

Authors:  Thomas Clouaire; Shaun Webb; Pete Skene; Robert Illingworth; Alastair Kerr; Robert Andrews; Jeong-Heon Lee; David Skalnik; Adrian Bird
Journal:  Genes Dev       Date:  2012-08-01       Impact factor: 11.361

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