Literature DB >> 20926746

Crowding and function reunite.

Gary J Pielak1, Andrew C Miklos.   

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Year:  2010        PMID： 20926746      PMCID： PMC2955103          DOI： 10.1073/pnas.1013095107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  17 in total

1.  Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding.

Authors:  Apratim Dhar; Antonios Samiotakis; Simon Ebbinghaus; Lea Nienhaus; Dirar Homouz; Martin Gruebele; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  The partition of solutes between buffer solutions and solutions containing hyaluronic acid.

Authors:  A G OGSTON; C F PHELPS
Journal:  Biochem J       Date:  1961-04       Impact factor: 3.857

3.  Upper limit of the time scale for diffusion and chain collapse in chymotrypsin inhibitor 2.

Authors:  A G Ladurner; A R Fersht
Journal:  Nat Struct Biol       Date:  1999-01

4.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

5.  Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation.

Authors:  B E Bernstein; P A Michels; W G Hol
Journal:  Nature       Date:  1997-01-16       Impact factor: 49.962

6.  Phosphotransfer hinges in PGK.

Authors:  C Blake
Journal:  Nature       Date:  1997-01-16       Impact factor: 49.962

7.  Volume exclusion and soft interaction effects on protein stability under crowded conditions.

Authors:  Andrew C Miklos; Conggang Li; Naima G Sharaf; Gary J Pielak
Journal:  Biochemistry       Date:  2010-08-24       Impact factor: 3.162

8.  On the separation ability of various Ficoll gradient solutions in zonal centrifugation.

Authors:  P N Lavrenko; O I Mikriukova; O V Okatova
Journal:  Anal Biochem       Date:  1987-11-01       Impact factor: 3.365

9.  Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state.

Authors:  Jiang Hong; Lila M Gierasch
Journal:  J Am Chem Soc       Date:  2010-08-04       Impact factor: 15.419

10.  Effect of macromolecular crowding upon the structure and function of an enzyme: glyceraldehyde-3-phosphate dehydrogenase.

Authors:  A P Minton; J Wilf
Journal:  Biochemistry       Date:  1981-08-18       Impact factor: 3.162
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  9 in total

1.  In vivo tests of thermodynamic models of transcription repressor function.

Authors:  Sudheer Tungtur; Harlyn Skinner; Hongli Zhan; Liskin Swint-Kruse; Dorothy Beckett
Journal:  Biophys Chem       Date:  2011-06-15       Impact factor: 2.352

Review 2.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

Authors:  Jan Spitzer
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

3.  Homolog comparisons further reconcile in vitro and in vivo correlations of protein activities by revealing over-looked physiological factors.

Authors:  Sudheer Tungtur; Kristen M Schwingen; Joshua J Riepe; Chamitha J Weeramange; Liskin Swint-Kruse
Journal:  Protein Sci       Date:  2019-08-09       Impact factor: 6.725

Review 4.  Soft interactions and crowding.

Authors:  Mohona Sarkar; Conggang Li; Gary J Pielak
Journal:  Biophys Rev       Date:  2013-02-21

5.  The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions.

Authors:  Robert Hänsel; Frank Löhr; Silvie Foldynová-Trantírková; Ernst Bamberg; Lukás Trantírek; Volker Dötsch
Journal:  Nucleic Acids Res       Date:  2011-03-30       Impact factor: 16.971

6.  Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.

Authors:  Henri Grosjean; Marc Breton; Pascal Sirand-Pugnet; Florence Tardy; François Thiaucourt; Christine Citti; Aurélien Barré; Satoko Yoshizawa; Dominique Fourmy; Valérie de Crécy-Lagard; Alain Blanchard
Journal:  PLoS Genet       Date:  2014-05-08       Impact factor: 5.917

7.  Phylogenomic analysis of "red" genes from two divergent species of the "green" secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes.

Authors:  Yi Yang; Motomichi Matsuzaki; Fumio Takahashi; Lei Qu; Hisayoshi Nozaki
Journal:  PLoS One       Date:  2014-06-27       Impact factor: 3.240

8.  Calcineurin in a Crowded World.

Authors:  Erik C Cook; Trevor P Creamer
Journal:  Biochemistry       Date:  2016-05-19       Impact factor: 3.162

Review 9.  Structured crowding and its effects on enzyme catalysis.

Authors:  Buyong Ma; Ruth Nussinov
Journal:  Top Curr Chem       Date:  2013
  9 in total

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