Literature DB >> 9886288

Upper limit of the time scale for diffusion and chain collapse in chymotrypsin inhibitor 2.

A G Ladurner1, A R Fersht.   

Abstract

The rates of folding of wild-type chymotrypsin inhibitor 2 (CI2) (t1/2 = 12 ms) and of faster (t1/2 = 2 ms) and slower (t1/2 = 350 ms) folding mutants are accelerated in parallel by increasing concentrations of sucrose, despite the increases in viscosity. At a viscosity 26 times that of water, the folding rate constant of wild-type CI2 is accelerated four-fold (t1/2 = 2.7 ms). From this, we can estimate that the diffusional chain collapse in CI2 occurs in less than 100 micros in water, and is not rate-determining in folding.

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Year:  1999        PMID: 9886288     DOI: 10.1038/4899

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  25 in total

1.  Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism.

Authors:  A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding.

Authors:  Apratim Dhar; Antonios Samiotakis; Simon Ebbinghaus; Lea Nienhaus; Dirar Homouz; Martin Gruebele; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

3.  Folding lambda-repressor at its speed limit.

Authors:  Wei Yuan Yang; Martin Gruebele
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

4.  Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

Authors:  Andrea Soranno; Brigitte Buchli; Daniel Nettels; Ryan R Cheng; Sonja Müller-Späth; Shawn H Pfeil; Armin Hoffmann; Everett A Lipman; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-06       Impact factor: 11.205

5.  Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains.

Authors:  Beth G Wensley; Lee Gyan Kwa; Sarah L Shammas; Joseph M Rogers; Stuart Browning; Ziqi Yang; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

6.  Crowding and function reunite.

Authors:  Gary J Pielak; Andrew C Miklos
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-06       Impact factor: 11.205

7.  Protein dynamics control proton transfer from bulk solvent to protein interior: a case study with a green fluorescent protein.

Authors:  Anoop M Saxena; Jayant B Udgaonkar; Guruswamy Krishnamoorthy
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

Review 8.  Single-molecule fluorescence studies of protein folding and conformational dynamics.

Authors:  Xavier Michalet; Shimon Weiss; Marcus Jäger
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

9.  Coordinate-dependent diffusion in protein folding.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

10.  Common crowding agents have only a small effect on protein-protein interactions.

Authors:  Yael Phillip; Eilon Sherman; Gilad Haran; Gideon Schreiber
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

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