Literature DB >> 20921049

Stylized facts in microalgal growth: interpretation in a dynamic energy budget context.

António Lorena1, Gonçalo M Marques, S A L M Kooijman, Tânia Sousa.   

Abstract

A dynamic energy budget (DEB) model for microalgae is proposed. This model deviates from the standard DEB model as it needs more reserves to cope with the variation of assimilation pathways, requiring a different approach to growth based on the synthesizing unit (SU) theory for multiple substrates. It is shown that the model is able to accurately predict experimental data in constant and light-varying conditions with most of the parameter values taken directly from the literature. Also, model simulations are shown to be consistent with stylized facts (SFs) concerning NC ratio. These SFs are reinterpreted and the general conclusion is that all forcing variables (dilution rate, temperature and irradiance) impose changes in the nitrogen or carbon limitation status of the population, and consequently on reserve densities. Model predictions are also evaluated in comparison with SFs on chlorophyll concentration. It is proposed that an extra structure, more dependent on the nitrogen reserve, is required to accurately model chlorophyll dynamics. Finally, SFs concerning extracellular polymeric substances (EPSs) production by benthic diatoms are collected and interpreted and a formulation based on product synthesis and rejection flux is proposed for the EPSs production rate.

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Year:  2010        PMID: 20921049      PMCID: PMC2981973          DOI: 10.1098/rstb.2010.0101

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  6 in total

Review 1.  Quantitative steps in symbiogenesis and the evolution of homeostasis.

Authors:  S A L M Kooijman; P Auger; J C Poggiale; B W Kooi
Journal:  Biol Rev Camb Philos Soc       Date:  2003-08

2.  How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton-zooplankton interactions.

Authors:  J-C Poggiale; M Baklouti; B Queguiner; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

Review 3.  From empirical patterns to theory: a formal metabolic theory of life.

Authors:  Tânia Sousa; Tiago Domingos; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-07-27       Impact factor: 6.237

4.  A cell-based model for the photoacclimation and CO(2)-acclimation of the photosynthetic apparatus.

Authors:  I A Papadakis; K Kotzabasis; K Lika
Journal:  Biochim Biophys Acta       Date:  2005-03-24

Review 5.  A unified theory for extracellular polymeric substances, soluble microbial products, and active and inert biomass.

Authors:  Chrysi S Laspidou; Bruce E Rittmann
Journal:  Water Res       Date:  2002-06       Impact factor: 11.236

6.  Interactions of microbial biofilms with toxic trace metals: 1. Observation and modeling of cell growth, attachment, and production of extracellular polymer.

Authors:  K M Hsieh; G A Murgel; L W Lion; M L Shuler
Journal:  Biotechnol Bioeng       Date:  1994-06-20       Impact factor: 4.530

  6 in total
  6 in total

1.  Modelling shellfish growth with dynamic energy budget models: an application for cockles and mussels in the Oosterschelde (southwest Netherlands).

Authors:  T A Troost; J W M Wijsman; S Saraiva; V Freitas
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

Review 2.  Dynamic energy budget theory restores coherence in biology.

Authors:  Tânia Sousa; Tiago Domingos; J-C Poggiale; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

3.  How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton-zooplankton interactions.

Authors:  J-C Poggiale; M Baklouti; B Queguiner; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

Review 4.  Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories.

Authors:  S Vinga; A R Neves; H Santos; B W Brandt; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

5.  A simple DEB-based ecosystem model.

Authors:  Jaap van der Meer; Vincent Hin; Pepijn van Oort; Karen E van de Wolfshaar
Journal:  Conserv Physiol       Date:  2022-08-06       Impact factor: 3.252

6.  Dynamic Energy Budget models: fertile ground for understanding resource allocation in plants in a changing world.

Authors:  Sabrina E Russo; Glenn Ledder; Erik B Muller; Roger M Nisbet
Journal:  Conserv Physiol       Date:  2022-09-15       Impact factor: 3.252

  6 in total

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