Literature DB >> 35949258

A simple DEB-based ecosystem model.

Jaap van der Meer1, Vincent Hin1, Pepijn van Oort2, Karen E van de Wolfshaar1.   

Abstract

A minimum stoichiometric carbon and nitrogen model of an entire ecosystem based on Dynamic Energy Budget (DEB) theory is presented. The ecosystem contains nutrients, producers, consumers, decomposers and detritus. All three living groups consist of somatic structure and either one (consumers and decomposers) or two (producers) reserve compartments, hence the living matter is described by seven state variables. Four types of detritus are distinguished. As the system is closed for matter, the dynamics of the nutrients carbon dioxide and ammonium follow automatically from the dynamics of the other 11 state variables. All DEB organisms in the model are V1-morphs, which means that surface area of each organism is proportional to volume. The resulting ontogenetic symmetry implies that complicated modelling of size structure is not required. The DEB V1-morph model is explained in detail, and the same holds for the idea of synthesizing units, which plays a key role in DEB modelling. First results of system dynamics are presented.
© The Author(s) 2022. Published by Oxford University Press and the Society for Experimental Biology.

Entities:  

Keywords:  Dynamic Energy Budget (DEB) theory; V1-morph; canonical community model; mass transformations; stoichiometry; synthesizing unit

Year:  2022        PMID: 35949258      PMCID: PMC9358698          DOI: 10.1093/conphys/coac057

Source DB:  PubMed          Journal:  Conserv Physiol        ISSN: 2051-1434            Impact factor:   3.252


  13 in total

Review 1.  Dynamic energy budget theory restores coherence in biology.

Authors:  Tânia Sousa; Tiago Domingos; J-C Poggiale; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-12       Impact factor: 6.237

Review 2.  From empirical patterns to theory: a formal metabolic theory of life.

Authors:  Tânia Sousa; Tiago Domingos; S A L M Kooijman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-07-27       Impact factor: 6.237

3.  Ontogenetic symmetry and asymmetry in energetics.

Authors:  André M De Roos; Johan A J Metz; Lennart Persson
Journal:  J Math Biol       Date:  2012-09-09       Impact factor: 2.259

4.  A study of the kinetics of hyphal extension and branch initiation of fungal mycelia.

Authors:  A P Trinci
Journal:  J Gen Microbiol       Date:  1974-03

5.  What the hen can tell about her eggs: egg development on the basis of energy budgets.

Authors:  S A Kooijman
Journal:  J Math Biol       Date:  1986       Impact factor: 2.259

Review 6.  From food-dependent statistics to metabolic parameters, a practical guide to the use of dynamic energy budget theory.

Authors:  S A L M Kooijman; T Sousa; L Pecquerie; J van der Meer; T Jager
Journal:  Biol Rev Camb Philos Soc       Date:  2008-11

7.  Concentrations and ratios of particulate organic carbon, nitrogen, and phosphorus in the global ocean.

Authors:  Adam C Martiny; Jasper A Vrugt; Michael W Lomas
Journal:  Sci Data       Date:  2014-12-09       Impact factor: 6.444

8.  A paradox in individual-based models of populations.

Authors:  Jaap van der Meer
Journal:  Conserv Physiol       Date:  2016-06-22       Impact factor: 3.079

9.  Mortality limits used in wind energy impact assessment underestimate impacts of wind farms on bird populations.

Authors:  Peter Schippers; Ralph Buij; Alex Schotman; Jana Verboom; Henk van der Jeugd; Eelke Jongejans
Journal:  Ecol Evol       Date:  2020-06-04       Impact factor: 2.912

10.  The AmP project: Comparing species on the basis of dynamic energy budget parameters.

Authors:  Gonçalo M Marques; Starrlight Augustine; Konstadia Lika; Laure Pecquerie; Tiago Domingos; Sebastiaan A L M Kooijman
Journal:  PLoS Comput Biol       Date:  2018-05-09       Impact factor: 4.475

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