Literature DB >> 20879396

Automatic lung lobe segmentation using particles, thin plate splines, and maximum a posteriori estimation.

James C Ross1, Rail San José Estépar, Gordon Kindlmann, Alejandro Díaz, Carl-Fredrik Westin, Edwin K Silverman, George R Washko.   

Abstract

We present a fully automatic lung lobe segmentation algorithm that is effective in high resolution computed tomography (CT) datasets in the presence of confounding factors such as incomplete fissures (anatomical structures indicating lobe boundaries), advanced disease states, high body mass index (BMI), and low-dose scanning protocols. In contrast to other algorithms that leverage segmentations of auxiliary structures (esp. vessels and airways), we rely only upon image features indicating fissure locations. We employ a particle system that samples the image domain and provides a set of candidate fissure locations. We follow this stage with maximum a posteriori (MAP) estimation to eliminate poor candidates and then perform a post-processing operation to remove remaining noise particles. We then fit a thin plate spline (TPS) interpolating surface to the fissure particles to form the final lung lobe segmentation. Results indicate that our algorithm performs comparably to pulmonologist-generated lung lobe segmentations on a set of challenging cases.

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Year:  2010        PMID: 20879396      PMCID: PMC3049444          DOI: 10.1007/978-3-642-15711-0_21

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  9 in total

1.  Automatic lung segmentation for accurate quantitation of volumetric X-ray CT images.

Authors:  S Hu; E A Hoffman; J M Reinhardt
Journal:  IEEE Trans Med Imaging       Date:  2001-06       Impact factor: 10.048

2.  High resolution CT anatomy of the pulmonary fissures.

Authors:  Aamer Aziz; Kazuto Ashizawa; Kenji Nagaoki; Kuniaki Hayashi
Journal:  J Thorac Imaging       Date:  2004-07       Impact factor: 3.000

3.  Automatic segmentation of the pulmonary lobes from fissures, airways, and lung borders: evaluation of robustness against missing data.

Authors:  Eva M van Rikxoort; Mathias Prokop; Bartjan de Hoop; Max A Viergever; Josien P W Pluim; Bram van Ginneken
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  Supervised enhancement filters: application to fissure detection in chest CT scans.

Authors:  E M van Rikxoort; B van Ginneken; M Klik; M Prokop
Journal:  IEEE Trans Med Imaging       Date:  2008-01       Impact factor: 10.048

Review 5.  Informatics in radiology (infoRAD): new tools for computer assistance in thoracic CT. Part 1. Functional analysis of lungs, lung lobes, and bronchopulmonary segments.

Authors:  Jan-Martin Kuhnigk; Volker Dicken; Stephan Zidowitz; Lars Bornemann; Bernd Kuemmerlen; Stefan Krass; Heinz-Otto Peitgen; Silja Yuval; Hans-Holger Jend; Wigbert S Rau; Tobias Achenbach
Journal:  Radiographics       Date:  2005 Mar-Apr       Impact factor: 5.333

6.  Lung extraction, lobe segmentation and hierarchical region assessment for quantitative analysis on high resolution computed tomography images.

Authors:  James C Ross; Raúl San José Estépar; Alejandro Díaz; Carl-Fredrik Westin; Ron Kikinis; Edwin K Silverman; George R Washko
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

7.  Sampling and visualizing creases with scale-space particles.

Authors:  Gordon L Kindlmann; Raúl San José Estépar; Stephen M Smith; Carl-Fredrik Westin
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

8.  Anatomy-guided lung lobe segmentation in X-ray CT images.

Authors:  Soumik Ukil; Joseph M Reinhardt
Journal:  IEEE Trans Med Imaging       Date:  2009-02       Impact factor: 10.048

9.  A randomized trial comparing lung-volume-reduction surgery with medical therapy for severe emphysema.

Authors:  Alfred Fishman; Fernando Martinez; Keith Naunheim; Steven Piantadosi; Robert Wise; Andrew Ries; Gail Weinmann; Douglas E Wood
Journal:  N Engl J Med       Date:  2003-05-20       Impact factor: 91.245

  9 in total
  10 in total

1.  Computed tomographic measures of pulmonary vascular morphology in smokers and their clinical implications.

Authors:  Raúl San José Estépar; Gregory L Kinney; Jennifer L Black-Shinn; Russell P Bowler; Gordon L Kindlmann; James C Ross; Ron Kikinis; Meilan K Han; Carolyn E Come; Alejandro A Diaz; Michael H Cho; Craig P Hersh; Joyce D Schroeder; John J Reilly; David A Lynch; James D Crapo; J Michael Wells; Mark T Dransfield; John E Hokanson; George R Washko
Journal:  Am J Respir Crit Care Med       Date:  2013-07-15       Impact factor: 21.405

Review 2.  Imaging approaches to understand disease complexity: chronic obstructive pulmonary disease as a clinical model.

Authors:  Karin J C Sanders; Samuel Y Ash; George R Washko; Felix M Mottaghy; Annemie M W J Schols
Journal:  J Appl Physiol (1985)       Date:  2017-07-27

Review 3.  Three-dimensional reconstruction of light microscopy image sections: present and future.

Authors:  Yuzhen Wang; Rui Xu; Gaoxing Luo; Jun Wu
Journal:  Front Med       Date:  2014-06-20       Impact factor: 4.592

4.  Pulmonary artery enlargement is associated with right ventricular dysfunction and loss of blood volume in small pulmonary vessels in chronic obstructive pulmonary disease.

Authors:  J Michael Wells; Anand S Iyer; Farbod N Rahaghi; Surya P Bhatt; Himanshu Gupta; Thomas S Denney; Steven G Lloyd; Louis J Dell'Italia; Hrudaya Nath; Raul San Jose Estepar; George R Washko; Mark T Dransfield
Journal:  Circ Cardiovasc Imaging       Date:  2015-04       Impact factor: 7.792

5.  The Objective Identification and Quantification of Interstitial Lung Abnormalities in Smokers.

Authors:  Samuel Y Ash; Rola Harmouche; James C Ross; Alejandro A Diaz; Gary M Hunninghake; Rachel K Putman; Jorge Onieva; Fernando J Martinez; Augustine M Choi; David A Lynch; Hiroto Hatabu; Ivan O Rosas; Raul San Jose Estepar; George R Washko
Journal:  Acad Radiol       Date:  2016-12-15       Impact factor: 3.173

6.  Pulmonary lobe segmentation based on ridge surface sampling and shape model fitting.

Authors:  James C Ross; Gordon L Kindlmann; Yuka Okajima; Hiroto Hatabu; Alejandro A Díaz; Edwin K Silverman; George R Washko; Jennifer Dy; Raúl San José Estépar
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

7.  Identification of pulmonary fissures using a piecewise plane fitting algorithm.

Authors:  Suicheng Gu; David Wilson; Zhimin Wang; William L Bigbee; Jill Siegfried; David Gur; Jiantao Pu
Journal:  Comput Med Imaging Graph       Date:  2012-06-29       Impact factor: 4.790

8.  Pruning of the Pulmonary Vasculature in Asthma. The Severe Asthma Research Program (SARP) Cohort.

Authors:  Samuel Y Ash; Farbod N Rahaghi; Carolyn E Come; James C Ross; Alysha G Colon; Juan Carlos Cardet-Guisasola; Eleanor M Dunican; Eugene R Bleecker; Mario Castro; John V Fahy; Sean B Fain; Benjamin M Gaston; Eric A Hoffman; Nizar N Jarjour; David T Mauger; Sally E Wenzel; Bruce D Levy; Raul San Jose Estepar; Elliot Israel; George R Washko
Journal:  Am J Respir Crit Care Med       Date:  2018-07-01       Impact factor: 30.528

9.  Densitometric and local histogram based analysis of computed tomography images in patients with idiopathic pulmonary fibrosis.

Authors:  Samuel Y Ash; Rola Harmouche; Diego Lassala Lopez Vallejo; Julian A Villalba; Kris Ostridge; River Gunville; Carolyn E Come; Jorge Onieva Onieva; James C Ross; Gary M Hunninghake; Souheil Y El-Chemaly; Tracy J Doyle; Pietro Nardelli; Gonzalo V Sanchez-Ferrero; Hilary J Goldberg; Ivan O Rosas; Raul San Jose Estepar; George R Washko
Journal:  Respir Res       Date:  2017-03-07

10.  Automatic pulmonary fissure detection and lobe segmentation in CT chest images.

Authors:  Shouliang Qi; Han J W van Triest; Yong Yue; Mingjie Xu; Yan Kang
Journal:  Biomed Eng Online       Date:  2014-05-07       Impact factor: 2.819

  10 in total

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