Literature DB >> 20873942

Frequency factors in a landscape model of filamentous protein aggregation.

Alexander K Buell1, Jamie R Blundell, Christopher M Dobson, Mark E Welland, Eugene M Terentjev, Tuomas P J Knowles.   

Abstract

Using quantitative measurements of protein aggregation rates, we develop a kinetic picture of protein conversion from a soluble to a fibrillar state which shows that a single free energy barrier to aggregation controls the addition of protein molecules into amyloid fibrils, while the characteristic sublinear concentration dependence emerges as a natural consequence of finite diffusion times. These findings suggest that this reaction does not follow a simple chemical mechanism, but rather operates in a way analogous to the landscape models of protein folding defined by stochastic dynamics on a characteristic energy surface.

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Year:  2010        PMID: 20873942     DOI: 10.1103/PhysRevLett.104.228101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  19 in total

1.  Electrostatic effects in filamentous protein aggregation.

Authors:  Alexander K Buell; Peter Hung; Xavier Salvatella; Mark E Welland; Christopher M Dobson; Tuomas P J Knowles
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

2.  Amyloid assembly is dominated by misregistered kinetic traps on an unbiased energy landscape.

Authors:  Zhiguang Jia; Jeremy D Schmit; Jianhan Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-28       Impact factor: 11.205

3.  Role of elongation and secondary pathways in S6 amyloid fibril growth.

Authors:  Nikolai Lorenzen; Samuel I A Cohen; Søren B Nielsen; Therese W Herling; Gunna Christiansen; Christopher M Dobson; Tuomas P J Knowles; Daniel Otzen
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

4.  Structural mapping of oligomeric intermediates in an amyloid assembly pathway.

Authors:  Theodoros K Karamanos; Matthew P Jackson; Antonio N Calabrese; Sophia C Goodchild; Emma E Cawood; Gary S Thompson; Arnout P Kalverda; Eric W Hewitt; Sheena E Radford
Journal:  Elife       Date:  2019-09-25       Impact factor: 8.140

5.  Population of nonnative states of lysozyme variants drives amyloid fibril formation.

Authors:  Alexander K Buell; Anne Dhulesia; Maria F Mossuto; Nunilo Cremades; Janet R Kumita; Mireille Dumoulin; Mark E Welland; Tuomas P J Knowles; Xavier Salvatella; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2011-04-29       Impact factor: 15.419

6.  Lipid vesicles trigger α-synuclein aggregation by stimulating primary nucleation.

Authors:  Céline Galvagnion; Alexander K Buell; Georg Meisl; Thomas C T Michaels; Michele Vendruscolo; Tuomas P J Knowles; Christopher M Dobson
Journal:  Nat Chem Biol       Date:  2015-02-02       Impact factor: 15.040

Review 7.  Ubiquitous amyloids.

Authors:  Wojciech Pulawski; Umesh Ghoshdastider; Vincenza Andrisano; Slawomir Filipek
Journal:  Appl Biochem Biotechnol       Date:  2012-02-19       Impact factor: 2.926

8.  Solution conditions determine the relative importance of nucleation and growth processes in α-synuclein aggregation.

Authors:  Alexander K Buell; Céline Galvagnion; Ricardo Gaspar; Emma Sparr; Michele Vendruscolo; Tuomas P J Knowles; Sara Linse; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-09       Impact factor: 11.205

9.  Inhibitor and substrate cooperate to inhibit amyloid fibril elongation of α-synuclein.

Authors:  Emil Dandanell Agerschou; Vera Borgmann; Michael M Wördehoff; Wolfgang Hoyer
Journal:  Chem Sci       Date:  2020-09-28       Impact factor: 9.825

10.  Connecting macroscopic observables and microscopic assembly events in amyloid formation using coarse grained simulations.

Authors:  Noah S Bieler; Tuomas P J Knowles; Daan Frenkel; Robert Vácha
Journal:  PLoS Comput Biol       Date:  2012-10-11       Impact factor: 4.475

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