Literature DB >> 21528861

Population of nonnative states of lysozyme variants drives amyloid fibril formation.

Alexander K Buell1, Anne Dhulesia2, Maria F Mossuto3, Nunilo Cremades2, Janet R Kumita2, Mireille Dumoulin4, Mark E Welland1, Tuomas P J Knowles2, Xavier Salvatella3,5, Christopher M Dobson2.   

Abstract

The propensity of protein molecules to self-assemble into highly ordered, fibrillar aggregates lies at the heart of understanding many disorders ranging from Alzheimer's disease to systemic lysozyme amyloidosis. In this paper we use highly accurate kinetic measurements of amyloid fibril growth in combination with spectroscopic tools to quantify the effect of modifications in solution conditions and in the amino acid sequence of human lysozyme on its propensity to form amyloid fibrils under acidic conditions. We elucidate and quantify the correlation between the rate of amyloid growth and the population of nonnative states, and we show that changes in amyloidogenicity are almost entirely due to alterations in the stability of the native state, while other regions of the global free-energy surface remain largely unmodified. These results provide insight into the complex dynamics of a macromolecule on a multidimensional energy landscape and point the way for a better understanding of amyloid diseases.

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Year:  2011        PMID: 21528861      PMCID: PMC4982536          DOI: 10.1021/ja109620d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

1.  Formation and seeding of amyloid fibrils from wild-type hen lysozyme and a peptide fragment from the beta-domain.

Authors:  M R Krebs; D K Wilkins; E W Chung; M C Pitkeathly; A K Chamberlain; J Zurdo; C V Robinson; C M Dobson
Journal:  J Mol Biol       Date:  2000-07-14       Impact factor: 5.469

2.  A non-natural variant of human lysozyme (I59T) mimics the in vitro behaviour of the I56T variant that is responsible for a form of familial amyloidosis.

Authors:  Christine L Hagan; Russell J K Johnson; Anne Dhulesia; Mireille Dumoulin; Janice Dumont; Erwin De Genst; John Christodoulou; Carol V Robinson; Christopher M Dobson; Janet R Kumita
Journal:  Protein Eng Des Sel       Date:  2010-04-09       Impact factor: 1.650

3.  Protein aggregation in crowded environments.

Authors:  Duncan A White; Alexander K Buell; Tuomas P J Knowles; Mark E Welland; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2010-04-14       Impact factor: 15.419

Review 4.  FT-IR approaches on amyloid fibril structure.

Authors:  Hirotsugu Hiramatsu; Teizo Kitagawa
Journal:  Biochim Biophys Acta       Date:  2005-07-26

5.  Position-dependent electrostatic protection against protein aggregation.

Authors:  Alexander K Buell; Gian Gaetano Tartaglia; Neil R Birkett; Christopher A Waudby; Michele Vendruscolo; Xavier Salvatella; Mark E Welland; Christopher M Dobson; Tuomas P J Knowles
Journal:  Chembiochem       Date:  2009-05-25       Impact factor: 3.164

6.  Conformational properties of the aggregation precursor state of HypF-N.

Authors:  Silvia Campioni; Maria F Mossuto; Silvia Torrassa; Giulia Calloni; Patrizia Polverino de Laureto; Annalisa Relini; Angelo Fontana; Fabrizio Chiti
Journal:  J Mol Biol       Date:  2008-04-08       Impact factor: 5.469

7.  alpha-synuclein fibrillogenesis is nucleation-dependent. Implications for the pathogenesis of Parkinson's disease.

Authors:  S J Wood; J Wypych; S Steavenson; J C Louis; M Citron; A L Biere
Journal:  J Biol Chem       Date:  1999-07-09       Impact factor: 5.157

8.  Local cooperativity in an amyloidogenic state of human lysozyme observed at atomic resolution.

Authors:  Anne Dhulesia; Nunilo Cremades; Janet R Kumita; Shang-Te Danny Hsu; Maria F Mossuto; Mireille Dumoulin; Daniel Nietlispach; Mikael Akke; Xavier Salvatella; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

9.  Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation.

Authors:  Houbi Nguyen; Marcus Jager; Alessandro Moretto; Martin Gruebele; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

10.  Fibril growth kinetics reveal a region of beta2-microglobulin important for nucleation and elongation of aggregation.

Authors:  Geoffrey W Platt; Katy E Routledge; Steve W Homans; Sheena E Radford
Journal:  J Mol Biol       Date:  2008-02-12       Impact factor: 5.469

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  20 in total

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Authors:  Huilin Shi; Nicholas A Pierson; Stephen J Valentine; David E Clemmer
Journal:  J Phys Chem B       Date:  2012-03-02       Impact factor: 2.991

2.  Electrostatic effects in filamentous protein aggregation.

Authors:  Alexander K Buell; Peter Hung; Xavier Salvatella; Mark E Welland; Christopher M Dobson; Tuomas P J Knowles
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

Review 3.  Factors affecting the physical stability (aggregation) of peptide therapeutics.

Authors:  Karolina L Zapadka; Frederik J Becher; A L Gomes Dos Santos; Sophie E Jackson
Journal:  Interface Focus       Date:  2017-10-20       Impact factor: 3.906

4.  Lysozyme stability and amyloid fibrillization dependence on Hofmeister anions in acidic pH.

Authors:  Slavomíra Poniková; Andrea Antošová; Erna Demjén; Dagmar Sedláková; Jozef Marek; Rastislav Varhač; Zuzana Gažová; Erik Sedlák
Journal:  J Biol Inorg Chem       Date:  2015-06-16       Impact factor: 3.358

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Authors:  Zhongli Zheng; Benxin Jing; Mirco Sorci; Georges Belfort; Yingxi Zhu
Journal:  Biomicrofluidics       Date:  2015-08-25       Impact factor: 2.800

6.  A nanobody binding to non-amyloidogenic regions of the protein human lysozyme enhances partial unfolding but inhibits amyloid fibril formation.

Authors:  Erwin De Genst; Pak-Ho Chan; Els Pardon; Shang-Te D Hsu; Janet R Kumita; John Christodoulou; Linda Menzer; Dimitri Y Chirgadze; Carol V Robinson; Serge Muyldermans; André Matagne; Lode Wyns; Christopher M Dobson; Mireille Dumoulin
Journal:  J Phys Chem B       Date:  2013-09-24       Impact factor: 2.991

Review 7.  Self-assembling peptide and protein amyloids: from structure to tailored function in nanotechnology.

Authors:  Gang Wei; Zhiqiang Su; Nicholas P Reynolds; Paolo Arosio; Ian W Hamley; Ehud Gazit; Raffaele Mezzenga
Journal:  Chem Soc Rev       Date:  2017-07-31       Impact factor: 54.564

8.  pH-induced molecular shedding drives the formation of amyloid fibril-derived oligomers.

Authors:  Kevin W Tipping; Theodoros K Karamanos; Toral Jakhria; Matthew G Iadanza; Sophia C Goodchild; Roman Tuma; Neil A Ranson; Eric W Hewitt; Sheena E Radford
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

Review 9.  Generating Ensembles of Dynamic Misfolding Proteins.

Authors:  Theodoros K Karamanos; Arnout P Kalverda; Sheena E Radford
Journal:  Front Neurosci       Date:  2022-03-31       Impact factor: 4.677

10.  Mechanism of protein kinetic stabilization by engineered disulfide crosslinks.

Authors:  Inmaculada Sanchez-Romero; Antonio Ariza; Keith S Wilson; Michael Skjøt; Jesper Vind; Leonardo De Maria; Lars K Skov; Jose M Sanchez-Ruiz
Journal:  PLoS One       Date:  2013-07-30       Impact factor: 3.240

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