Literature DB >> 20873788

Reconstitution of diphthine synthase activity in vitro.

Xuling Zhu1, Jungwoo Kim, Xiaoyang Su, Hening Lin.   

Abstract

Diphthamide, the target of diphtheria toxin, is a unique posttranslational modification on eukaryotic and archaeal translation elongation factor 2 (EF2). Although diphthamide modification was discovered three decades ago, in vitro reconstitution of diphthamide biosynthesis using purified proteins has not been reported. The proposed biosynthesis pathway of diphthamide involves three steps. Our laboratory has recently showed that in Pyrococcus horikoshii (P. horikoshii), the first step uses a [4Fe-4S] enzyme PhDph2 to generate a 3-amino-3-carboxypropyl radical from S-adenosyl-L-methionine (SAM) to form a C−C bond. The second step is the trimethylation of an amino group to form the diphthine intermediate. This step is catalyzed by a methyltransferase called diphthine synthase or Dph5. Here we report the in vitro reconstitution of the second step using P. horikoshii Dph5 (PhDph5). Our results demonstrate that PhDph5 is sufficient to catalyze the mono-, di-, and trimethylation of P. horikoshii EF2 (PhEF2). Interestingly, the trimethylated product from the PhDph5-catalyzed reaction can easily eliminate the trimethylamino group. The potential implication of this unexpected finding on the diphthamide biosynthesis pathway is discussed.

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Year:  2010        PMID: 20873788      PMCID: PMC3049195          DOI: 10.1021/bi100812h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution.

Authors:  M G Gomez-Lorenzo; C M Spahn; R K Agrawal; R A Grassucci; P Penczek; K Chakraburtty; J P Ballesta; J L Lavandera; J F Garcia-Bustos; J Frank
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

2.  Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods.

Authors:  H J Sofia; G Chen; B G Hetzler; J F Reyes-Spindola; N E Miller
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

3.  Biosynthesis of diphthamide in Saccharomyces cerevisiae. Partial purification and characterization of a specific S-adenosylmethionine:elongation factor 2 methyltransferase.

Authors:  J Y Chen; J W Bodley
Journal:  J Biol Chem       Date:  1988-08-25       Impact factor: 5.157

4.  Identification of the proteins required for biosynthesis of diphthamide, the target of bacterial ADP-ribosylating toxins on translation elongation factor 2.

Authors:  Shihui Liu; G Todd Milne; Jeffrey G Kuremsky; Gerald R Fink; Stephen H Leppla
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

5.  Diphthamide synthesis in Saccharomyces cerevisiae: structure of the DPH2 gene.

Authors:  L C Mattheakis; F Sor; R J Collier
Journal:  Gene       Date:  1993-09-30       Impact factor: 3.688

6.  Crystal structure of ADP-ribosylated ribosomal translocase from Saccharomyces cerevisiae.

Authors:  René Jørgensen; Susan P Yates; David J Teal; Jakob Nilsson; Gerry A Prentice; A Rod Merrill; Gregers Rom Andersen
Journal:  J Biol Chem       Date:  2004-08-16       Impact factor: 5.157

7.  Cloning and localization of a human diphthamide biosynthesis-like protein-2 gene, DPH2L2.

Authors:  D C Schultz; B R Balasara; J R Testa; A K Godwin
Journal:  Genomics       Date:  1998-09-01       Impact factor: 5.736

8.  A cDNA from the ovarian cancer critical region of deletion on chromosome 17p13.3.

Authors:  N J Phillips; M R Zeigler; L L Deaven
Journal:  Cancer Lett       Date:  1996-04-19       Impact factor: 8.679

Review 9.  Understanding the mode of action of diphtheria toxin: a perspective on progress during the 20th century.

Authors:  R J Collier
Journal:  Toxicon       Date:  2001-11       Impact factor: 3.035

10.  Diphthamide biosynthesis requires an organic radical generated by an iron-sulphur enzyme.

Authors:  Yang Zhang; Xuling Zhu; Andrew T Torelli; Michael Lee; Boris Dzikovski; Rachel M Koralewski; Eileen Wang; Jack Freed; Carsten Krebs; Steven E Ealick; Hening Lin
Journal:  Nature       Date:  2010-06-17       Impact factor: 49.962

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  13 in total

1.  Noncanonical Radical SAM Enzyme Chemistry Learned from Diphthamide Biosynthesis.

Authors:  Min Dong; Yugang Zhang; Hening Lin
Journal:  Biochemistry       Date:  2018-05-10       Impact factor: 3.162

2.  Chemogenomic approach identified yeast YLR143W as diphthamide synthetase.

Authors:  Xiaoyang Su; Zhewang Lin; Wei Chen; Hong Jiang; Sheng Zhang; Hening Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

3.  Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics.

Authors:  Elizabeth I Parkinson; James H Tryon; Anthony W Goering; Kou-San Ju; Ryan A McClure; Jeremy D Kemball; Sara Zhukovsky; David P Labeda; Regan J Thomson; Neil L Kelleher; William W Metcalf
Journal:  ACS Chem Biol       Date:  2018-03-13       Impact factor: 5.100

4.  YBR246W is required for the third step of diphthamide biosynthesis.

Authors:  Xiaoyang Su; Wei Chen; Wankyu Lee; Hong Jiang; Sheng Zhang; Hening Lin
Journal:  J Am Chem Soc       Date:  2011-12-21       Impact factor: 15.419

5.  Immunotoxin resistance via reversible methylation of the DPH4 promoter is a unique survival strategy.

Authors:  Hui Wei; Laiman Xiang; Alan S Wayne; Oleg Chertov; David J FitzGerald; Tapan K Bera; Ira Pastan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

6.  Methylation of the DPH1 promoter causes immunotoxin resistance in acute lymphoblastic leukemia cell line KOPN-8.

Authors:  Xiaobo Hu; Hui Wei; Laiman Xiang; Oleg Chertov; Alan S Wayne; Tapan K Bera; Ira Pastan
Journal:  Leuk Res       Date:  2013-08-13       Impact factor: 3.156

7.  Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage.

Authors:  Valérie de Crécy-Lagard; Farhad Forouhar; Céline Brochier-Armanet; Liang Tong; John F Hunt
Journal:  Biol Direct       Date:  2012-09-26       Impact factor: 4.540

8.  The amidation step of diphthamide biosynthesis in yeast requires DPH6, a gene identified through mining the DPH1-DPH5 interaction network.

Authors:  Shanow Uthman; Christian Bär; Viktor Scheidt; Shihui Liu; Sara ten Have; Flaviano Giorgini; Michael J R Stark; Raffael Schaffrath
Journal:  PLoS Genet       Date:  2013-02-28       Impact factor: 5.917

9.  Insights into diphthamide, key diphtheria toxin effector.

Authors:  Wael Abdel-Fattah; Viktor Scheidt; Shanow Uthman; Michael J R Stark; Raffael Schaffrath
Journal:  Toxins (Basel)       Date:  2013-05-03       Impact factor: 4.546

Review 10.  The biosynthesis and biological function of diphthamide.

Authors:  Xiaoyang Su; Zhewang Lin; Hening Lin
Journal:  Crit Rev Biochem Mol Biol       Date:  2013-08-23       Impact factor: 8.697

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