Literature DB >> 20870402

Origin DNA melting and unwinding in DNA replication.

Dahai Gai1, Y Paul Chang, Xiaojiang S Chen.   

Abstract

Genomic DNA replication is a necessary step in the life cycles of all organisms. To initiate DNA replication, the double-stranded DNA (dsDNA) at the origin of replication must be separated or melted; this melted region is propagated and a mature replication fork is formed. To accomplish origin recognition, initial DNA melting, and the eventual formation of a replication fork, coordinated activity of initiators, helicases, and other cellular factors are required. In this review, we focus on recent advances in the structural and biochemical studies of the initiators and the replicative helicases in multiple replication systems, with emphasis on the systems in archaeal and eukaryotic cells. These studies have yielded insights into the plausible mechanisms of the early stages of DNA replication.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20870402      PMCID: PMC2997676          DOI: 10.1016/j.sbi.2010.08.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

Review 1.  Two heads are better than one: regulation of DNA replication by hexameric helicases.

Authors:  Robert A Sclafani; Ryan J Fletcher; Xiaojiang S Chen
Journal:  Genes Dev       Date:  2004-09-01       Impact factor: 11.361

2.  Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen.

Authors:  Dahai Gai; Rui Zhao; Dawei Li; Carla V Finkielstein; Xiaojiang S Chen
Journal:  Cell       Date:  2004-10-01       Impact factor: 41.582

3.  Two regions of simian virus 40 T antigen determine cooperativity of double-hexamer assembly on the viral origin of DNA replication and promote hexamer interactions during bidirectional origin DNA unwinding.

Authors:  K Weisshart; P Taneja; A Jenne; U Herbig; D T Simmons; E Fanning
Journal:  J Virol       Date:  1999-03       Impact factor: 5.103

4.  ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication.

Authors:  I A Mastrangelo; P V Hough; J S Wall; M Dodson; F B Dean; J Hurwitz
Journal:  Nature       Date:  1989-04-20       Impact factor: 49.962

5.  Structural polymorphism of Methanothermobacter thermautotrophicus MCM.

Authors:  Yen-Ju Chen; Xiong Yu; Rajesh Kasiviswanathan; Jae-Ho Shin; Zvi Kelman; Edward H Egelman
Journal:  J Mol Biol       Date:  2005-01-08       Impact factor: 5.469

6.  Characterization of the nucleotide binding properties of SV40 T antigen using fluorescent 3'(2')-O-(2,4,6-trinitrophenyl)adenine nucleotide analogues.

Authors:  S G Huang; K Weisshart; E Fanning
Journal:  Biochemistry       Date:  1998-11-03       Impact factor: 3.162

7.  Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen.

Authors:  Dawei Li; Rui Zhao; Wayne Lilyestrom; Dahai Gai; Rongguang Zhang; James A DeCaprio; Ellen Fanning; Andrzej Jochimiak; Gerda Szakonyi; Xiaojiang S Chen
Journal:  Nature       Date:  2003-05-29       Impact factor: 49.962

8.  Simian virus 40 T-antigen DNA helicase is a hexamer which forms a binary complex during bidirectional unwinding from the viral origin of DNA replication.

Authors:  R Wessel; J Schweizer; H Stahl
Journal:  J Virol       Date:  1992-02       Impact factor: 5.103

9.  Synthetic DNA replication bubbles bound and unwound with twofold symmetry by a simian virus 40 T-antigen double hexamer.

Authors:  N V Smelkova; J A Borowiec
Journal:  J Virol       Date:  1998-11       Impact factor: 5.103

10.  Localized melting and structural changes in the SV40 origin of replication induced by T-antigen.

Authors:  J A Borowiec; J Hurwitz
Journal:  EMBO J       Date:  1988-10       Impact factor: 11.598

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  19 in total

1.  DNA replication: Strand separation unravelled.

Authors:  Matthew L Bochman; Anthony Schwacha
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

Review 2.  The nuts and bolts of ring-translocase structure and mechanism.

Authors:  Artem Y Lyubimov; Melania Strycharska; James M Berger
Journal:  Curr Opin Struct Biol       Date:  2011-02-01       Impact factor: 6.809

3.  Origin single-stranded DNA releases Sld3 protein from the Mcm2-7 complex, allowing the GINS tetramer to bind the Mcm2-7 complex.

Authors:  Irina Bruck; Daniel L Kaplan
Journal:  J Biol Chem       Date:  2011-04-01       Impact factor: 5.157

4.  Dynamic look at DNA unwinding by a replicative helicase.

Authors:  Seung-Jae Lee; Salman Syed; Eric J Enemark; Stephen Schuck; Arne Stenlund; Taekjip Ha; Leemor Joshua-Tor
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

5.  Insights into the Initiation of Eukaryotic DNA Replication.

Authors:  Irina Bruck; Patricia Perez-Arnaiz; Max K Colbert; Daniel L Kaplan
Journal:  Nucleus       Date:  2015-12-28       Impact factor: 4.197

6.  Asymmetric assembly of Merkel cell polyomavirus large T-antigen origin binding domains at the viral origin.

Authors:  Celia J Harrison; Gretchen Meinke; Hyun Jin Kwun; Henry Rogalin; Paul J Phelan; Peter A Bullock; Yuan Chang; Patrick S Moore; Andrew Bohm
Journal:  J Mol Biol       Date:  2011-04-09       Impact factor: 5.469

Review 7.  The ring-shaped hexameric helicases that function at DNA replication forks.

Authors:  Michael E O'Donnell; Huilin Li
Journal:  Nat Struct Mol Biol       Date:  2018-01-29       Impact factor: 15.369

Review 8.  Loading strategies of ring-shaped nucleic acid translocases and helicases.

Authors:  Valerie L O'Shea; James M Berger
Journal:  Curr Opin Struct Biol       Date:  2013-12-18       Impact factor: 6.809

Review 9.  Principles and concepts of DNA replication in bacteria, archaea, and eukarya.

Authors:  Michael O'Donnell; Lance Langston; Bruce Stillman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-07-01       Impact factor: 10.005

10.  Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin.

Authors:  Emily Wheeler; Ashley M Brooks; Lorenzo Concia; Daniel L Vera; Emily E Wear; Chantal LeBlanc; Umamaheswari Ramu; Matthew W Vaughn; Hank W Bass; Robert A Martienssen; William F Thompson; Linda Hanley-Bowdoin
Journal:  Plant Physiol       Date:  2020-03-23       Impact factor: 8.340

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