Literature DB >> 20869786

Gene targeting in the rat: advances and opportunities.

Howard J Jacob1, Jozef Lazar, Melinda R Dwinell, Carol Moreno, Aron M Geurts.   

Abstract

The rat has long been a model favored by physiologists, pharmacologists and neuroscientists. However, over the past two decades, many investigators in these fields have turned to the mouse because of its gene modification technologies and extensive genomic resources. Although the genomic resources of the rat have nearly caught up, gene targeting has lagged far behind, limiting the value of the rat for many investigators. In the past two years, advances in transposon- and zinc finger nuclease (ZFN)-mediated gene knockout as well as the establishment and culturing of embryonic and inducible pluripotent stem cells have created new opportunities for rat genetic research. Here, we provide a high-level description and the potential uses of these new technologies for investigators using the rat for biomedical research.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20869786      PMCID: PMC2991520          DOI: 10.1016/j.tig.2010.08.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  57 in total

1.  Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome.

Authors:  Russell C DeKelver; Vivian M Choi; Erica A Moehle; David E Paschon; Dirk Hockemeyer; Sebastiaan H Meijsing; Yasemin Sancak; Xiaoxia Cui; Eveline J Steine; Jeffrey C Miller; Phillip Tam; Victor V Bartsevich; Xiangdong Meng; Igor Rupniewski; Sunita M Gopalan; Helena C Sun; Kathleen J Pitz; Jeremy M Rock; Lei Zhang; Gregory D Davis; Edward J Rebar; Iain M Cheeseman; Keith R Yamamoto; David M Sabatini; Rudolf Jaenisch; Philip D Gregory; Fyodor D Urnov
Journal:  Genome Res       Date:  2010-05-27       Impact factor: 9.043

Review 2.  The mechanism of human nonhomologous DNA end joining.

Authors:  Michael R Lieber
Journal:  J Biol Chem       Date:  2007-11-12       Impact factor: 5.157

Review 3.  Reprogramming somatic cells towards pluripotency by defined factors.

Authors:  Marc Lewitzky; Shinya Yamanaka
Journal:  Curr Opin Biotechnol       Date:  2007-10       Impact factor: 9.740

4.  An improved zinc-finger nuclease architecture for highly specific genome editing.

Authors:  Jeffrey C Miller; Michael C Holmes; Jianbin Wang; Dmitry Y Guschin; Ya-Li Lee; Igor Rupniewski; Christian M Beausejour; Adam J Waite; Nathaniel S Wang; Kenneth A Kim; Philip D Gregory; Carl O Pabo; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2007-07-01       Impact factor: 54.908

5.  Generating knockout rats by transposon mutagenesis in spermatogonial stem cells.

Authors:  Zsuzsanna Izsvák; Janine Fröhlich; Ivana Grabundzija; James R Shirley; Heather M Powell; Karen M Chapman; Zoltán Ivics; F Kent Hamra
Journal:  Nat Methods       Date:  2010-05-16       Impact factor: 28.547

Review 6.  Zinc-finger nucleases: new strategies to target the rat genome.

Authors:  Aron M Geurts; Carol Moreno
Journal:  Clin Sci (Lond)       Date:  2010-07-06       Impact factor: 6.124

7.  Efficient generation of transgenic rats through the male germline using lentiviral transduction and transplantation of spermatogonial stem cells.

Authors:  Buom-Yong Ryu; Kyle E Orwig; Jon M Oatley; Chih-Cheng Lin; Lung-Ji Chang; Mary R Avarbock; Ralph L Brinster
Journal:  J Androl       Date:  2006-11-15

8.  Rat embryonic stem-like (ES-like) cells can contribute to extraembryonic tissues in vivo.

Authors:  Simon-Pierre Demers; Jae Gyu Yoo; Li Lian; Jacinthe Therrien; Lawrence C Smith
Journal:  Cloning Stem Cells       Date:  2007

9.  Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases.

Authors:  Erica A Moehle; E A Moehle; Jeremy M Rock; J M Rock; Ya-Li Lee; Y L Lee; Yann Jouvenot; Y Jouvenot; Russell C DeKelver; R C Dekelver; Philip D Gregory; P D Gregory; Fyodor D Urnov; F D Urnov; Michael C Holmes; M C Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

10.  Generation of rat mutants using a coat color-tagged Sleeping Beauty transposon system.

Authors:  Baisong Lu; Aron M Geurts; Christophe Poirier; Deborah C Petit; Wilbur Harrison; Paul A Overbeek; Colin E Bishop
Journal:  Mamm Genome       Date:  2007-06-08       Impact factor: 2.957

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  49 in total

1.  Sleeping Beauty transposon mutagenesis in rat spermatogonial stem cells.

Authors:  Zoltán Ivics; Zsuzsanna Izsvák; Gerardo Medrano; Karen M Chapman; F Kent Hamra
Journal:  Nat Protoc       Date:  2011-09-08       Impact factor: 13.491

2.  Potentially diagnostic electron paramagnetic resonance spectra elucidate the underlying mechanism of mitochondrial dysfunction in the deoxyguanosine kinase deficient rat model of a genetic mitochondrial DNA depletion syndrome.

Authors:  Brian Bennett; Daniel Helbling; Hui Meng; Jason Jarzembowski; Aron M Geurts; Marisa W Friederich; Johan L K Van Hove; Michael W Lawlor; David P Dimmock
Journal:  Free Radic Biol Med       Date:  2016-01-08       Impact factor: 7.376

3.  Differences in radiation sensitivity of recovery of spermatogenesis between rat strains.

Authors:  Mahmoud Abuelhija; Connie C Weng; Gunapala Shetty; Marvin L Meistrich
Journal:  Toxicol Sci       Date:  2012-01-23       Impact factor: 4.849

Review 4.  Rat placentation: an experimental model for investigating the hemochorial maternal-fetal interface.

Authors:  M J Soares; D Chakraborty; M A Karim Rumi; T Konno; S J Renaud
Journal:  Placenta       Date:  2012-01-28       Impact factor: 3.481

5.  Derivation of rat embryonic stem cells and generation of protease-activated receptor-2 knockout rats.

Authors:  Satoshi Yamamoto; Mitsugu Nakata; Reiko Sasada; Yuki Ooshima; Takashi Yano; Tadahiro Shinozawa; Yasuhiro Tsukimi; Michiyasu Takeyama; Yoshio Matsumoto; Tadatoshi Hashimoto
Journal:  Transgenic Res       Date:  2011-10-15       Impact factor: 2.788

Review 6.  Adaptive mechanisms controlling uterine spiral artery remodeling during the establishment of pregnancy.

Authors:  Michael J Soares; Damayanti Chakraborty; Kaiyu Kubota; Stephen J Renaud; M A Karim Rumi
Journal:  Int J Dev Biol       Date:  2014       Impact factor: 2.203

7.  Future translational applications from the contemporary genomics era: a scientific statement from the American Heart Association.

Authors:  Caroline S Fox; Jennifer L Hall; Donna K Arnett; Euan A Ashley; Christian Delles; Mary B Engler; Mason W Freeman; Julie A Johnson; David E Lanfear; Stephen B Liggett; Aldons J Lusis; Joseph Loscalzo; Calum A MacRae; Kiran Musunuru; L Kristin Newby; Christopher J O'Donnell; Stephen S Rich; Andre Terzic
Journal:  Circulation       Date:  2015-04-16       Impact factor: 29.690

Review 8.  Model organism data evolving in support of translational medicine.

Authors:  Douglas G Howe; Judith A Blake; Yvonne M Bradford; Carol J Bult; Brian R Calvi; Stacia R Engel; James A Kadin; Thomas C Kaufman; Ranjana Kishore; Stanley J F Laulederkind; Suzanna E Lewis; Sierra A T Moxon; Joel E Richardson; Cynthia Smith
Journal:  Lab Anim (NY)       Date:  2018-09-17       Impact factor: 12.625

Review 9.  The emerging role for rat models in gene discovery.

Authors:  Melinda R Dwinell; Jozef Lazar; Aron M Geurts
Journal:  Mamm Genome       Date:  2011-07-06       Impact factor: 2.957

Review 10.  Comparative genetics: synergizing human and NOD mouse studies for identifying genetic causation of type 1 diabetes.

Authors:  John P Driver; Yi-Guang Chen; Clayton E Mathews
Journal:  Rev Diabet Stud       Date:  2012-12-28
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