Literature DB >> 20864998

Conical intersection dynamics of the primary photoisomerization event in vision.

Dario Polli1, Piero Altoè, Oliver Weingart, Katelyn M Spillane, Cristian Manzoni, Daniele Brida, Gaia Tomasello, Giorgio Orlandi, Philipp Kukura, Richard A Mathies, Marco Garavelli, Giulio Cerullo.   

Abstract

Ever since the conversion of the 11-cis retinal chromophore to its all-trans form in rhodopsin was identified as the primary photochemical event in vision, experimentalists and theoreticians have tried to unravel the molecular details of this process. The high quantum yield of 0.65 (ref. 2), the production of the primary ground-state rhodopsin photoproduct within a mere 200 fs (refs 3-7), and the storage of considerable energy in the first stable bathorhodopsin intermediate all suggest an unusually fast and efficient photoactivated one-way reaction. Rhodopsin's unique reactivity is generally attributed to a conical intersection between the potential energy surfaces of the ground and excited electronic states enabling the efficient and ultrafast conversion of photon energy into chemical energy. But obtaining direct experimental evidence for the involvement of a conical intersection is challenging: the energy gap between the electronic states of the reacting molecule changes significantly over an ultrashort timescale, which calls for observational methods that combine high temporal resolution with a broad spectral observation window. Here we show that ultrafast optical spectroscopy with sub-20-fs time resolution and spectral coverage from the visible to the near-infrared allows us to follow the dynamics leading to the conical intersection in rhodopsin isomerization. We track coherent wave-packet motion from the photoexcited Franck-Condon region to the photoproduct by monitoring the loss of reactant emission and the subsequent appearance of photoproduct absorption, and find excellent agreement between the experimental observations and molecular dynamics calculations that involve a true electronic state crossing. Taken together, these findings constitute the most compelling evidence to date for the existence and importance of conical intersections in visual photochemistry.

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Year:  2010        PMID: 20864998     DOI: 10.1038/nature09346

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  26 in total

1.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

Review 2.  Isomerization through conical intersections.

Authors:  Benjamin G Levine; Todd J Martínez
Journal:  Annu Rev Phys Chem       Date:  2007       Impact factor: 12.703

3.  Bicycle-pedal model for the first step in the vision process.

Authors:  A Warshel
Journal:  Nature       Date:  1976-04-22       Impact factor: 49.962

4.  The catalytic activity of proline racemase: a quantum mechanical/molecular mechanical study.

Authors:  Marco Stenta; Matteo Calvaresi; Piero Altoè; Domenico Spinelli; Marco Garavelli; Andrea Bottoni
Journal:  J Phys Chem B       Date:  2007-11-29       Impact factor: 2.991

5.  Ultrafast deactivation of an excited cytosine-guanine base pair in DNA.

Authors:  Gerrit Groenhof; Lars V Schäfer; Martial Boggio-Pasqua; Maik Goette; Helmut Grubmüller; Michael A Robb
Journal:  J Am Chem Soc       Date:  2007-05-08       Impact factor: 15.419

6.  Photochemical reaction dynamics of the primary event of vision studied by means of a hybrid molecular simulation.

Authors:  Shigehiko Hayashi; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

7.  Energy storage in the primary photochemical events of rhodopsin and isorhodopsin.

Authors:  G A Schick; T M Cooper; R A Holloway; L P Murray; R R Birge
Journal:  Biochemistry       Date:  1987-05-05       Impact factor: 3.162

8.  Vibrationally coherent photochemistry in the femtosecond primary event of vision.

Authors:  Q Wang; R W Schoenlein; L A Peteanu; R A Mathies; C V Shank
Journal:  Science       Date:  1994-10-21       Impact factor: 47.728

9.  Counterion controlled photoisomerization of retinal chromophore models: a computational investigation.

Authors:  Alessandro Cembran; Fernando Bernardi; Massimo Olivucci; Marco Garavelli
Journal:  J Am Chem Soc       Date:  2004-12-15       Impact factor: 15.419

10.  Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization.

Authors:  R González-Luque; M Garavelli; F Bernardi; M Merchán; M A Robb; M Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-15       Impact factor: 11.205

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  88 in total

1.  A large geometric distortion in the first photointermediate of rhodopsin, determined by double-quantum solid-state NMR.

Authors:  Maria Concistrè; Ole G Johannessen; Neville McLean; Petra H M Bovee-Geurts; Richard C D Brown; Willem J Degrip; Malcolm H Levitt
Journal:  J Biomol NMR       Date:  2012-05-26       Impact factor: 2.835

2.  Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.

Authors:  Piero Altoè; Alessandro Cembran; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

3.  Physical chemistry: Seaming is believing.

Authors:  Todd J Martinez
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

4.  Local vibrational coherences drive the primary photochemistry of vision.

Authors:  Philip J M Johnson; Alexei Halpin; Takefumi Morizumi; Valentyn I Prokhorenko; Oliver P Ernst; R J Dwayne Miller
Journal:  Nat Chem       Date:  2015-11-16       Impact factor: 24.427

5.  Photochemistry: A coherent picture of vision.

Authors:  Richard A Mathies
Journal:  Nat Chem       Date:  2015-12       Impact factor: 24.427

6.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

Review 7.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

8.  Relationship between Excited State Lifetime and Isomerization Quantum Yield in Animal Rhodopsins: Beyond the One-Dimensional Landau-Zener Model.

Authors:  Mohsen M T El-Tahawy; Artur Nenov; Oliver Weingart; Massimo Olivucci; Marco Garavelli
Journal:  J Phys Chem Lett       Date:  2018-06-06       Impact factor: 6.475

9.  Vibrational motions associated with primary processes in bacteriorhodopsin studied by coherent infrared emission spectroscopy.

Authors:  Géza I Groma; Anne Colonna; Jean-Louis Martin; Marten H Vos
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

10.  The molecular origin of high DNA-repair efficiency by photolyase.

Authors:  Chuang Tan; Zheyun Liu; Jiang Li; Xunmin Guo; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Nat Commun       Date:  2015-06-11       Impact factor: 14.919

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