Literature DB >> 20855575

To pool, or not to pool?

David J Cutler1, Jeffrey D Jensen.   

Abstract

Mesh:

Year:  2010        PMID: 20855575      PMCID: PMC2940305          DOI: 10.1534/genetics.110.121012

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


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  18 in total

1.  An analysis of strategies for discovery of single-nucleotide polymorphisms.

Authors:  M A Eberle; L Kruglyak
Journal:  Genet Epidemiol       Date:  2000       Impact factor: 2.135

2.  The signature of positive selection at randomly chosen loci.

Authors:  Molly Przeworski
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

3.  On the number of segregating sites in genetical models without recombination.

Authors:  G A Watterson
Journal:  Theor Popul Biol       Date:  1975-04       Impact factor: 1.570

4.  The next generation of molecular markers from massively parallel sequencing of pooled DNA samples.

Authors:  Andreas Futschik; Christian Schlötterer
Journal:  Genetics       Date:  2010-05-10       Impact factor: 4.562

5.  A haplotype map of the human genome.

Authors: 
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

6.  The hitchhiking effect on linkage disequilibrium between linked neutral loci.

Authors:  Wolfgang Stephan; Yun S Song; Charles H Langley
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

7.  Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster.

Authors:  Kevin Thornton; Peter Andolfatto
Journal:  Genetics       Date:  2005-11-19       Impact factor: 4.562

8.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

9.  The effect of deleterious mutations on neutral molecular variation.

Authors:  B Charlesworth; M T Morgan; D Charlesworth
Journal:  Genetics       Date:  1993-08       Impact factor: 4.562

10.  Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster.

Authors:  R R Hudson; K Bailey; D Skarecky; J Kwiatowski; F J Ayala
Journal:  Genetics       Date:  1994-04       Impact factor: 4.562

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  38 in total

1.  SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data.

Authors:  Chase W Nelson; Louise H Moncla; Austin L Hughes
Journal:  Bioinformatics       Date:  2015-07-29       Impact factor: 6.937

2.  Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof.

Authors:  A Esteve-Codina; R Kofler; H Himmelbauer; L Ferretti; A P Vivancos; M A M Groenen; J M Folch; M C Rodríguez; M Pérez-Enciso
Journal:  Heredity (Edinb)       Date:  2011-03-16       Impact factor: 3.821

3.  Measuring Genetic Differentiation from Pool-seq Data.

Authors:  Valentin Hivert; Raphaël Leblois; Eric J Petit; Mathieu Gautier; Renaud Vitalis
Journal:  Genetics       Date:  2018-07-30       Impact factor: 4.562

4.  Robust identification of local adaptation from allele frequencies.

Authors:  Torsten Günther; Graham Coop
Journal:  Genetics       Date:  2013-07-02       Impact factor: 4.562

5.  Genome-wide patterns of genetic diversity, population structure and demographic history in mānuka (Leptospermum scoparium) growing on indigenous Māori land.

Authors:  Emily Koot; Elise Arnst; Melissa Taane; Kelsey Goldsmith; Amali Thrimawithana; Kiri Reihana; Santiago C González-Martínez; Victor Goldsmith; Gary Houliston; David Chagné
Journal:  Hortic Res       Date:  2022-01-18       Impact factor: 6.793

6.  Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs.

Authors:  Anna Esteve-Codina; Yogesh Paudel; Luca Ferretti; Emanuele Raineri; Hendrik-Jan Megens; Luis Silió; María C Rodríguez; Martein A M Groenen; Sebastian E Ramos-Onsins; Miguel Pérez-Enciso
Journal:  BMC Genomics       Date:  2013-03-05       Impact factor: 3.969

7.  Multi-locus analysis of genomic time series data from experimental evolution.

Authors:  Jonathan Terhorst; Christian Schlötterer; Yun S Song
Journal:  PLoS Genet       Date:  2015-04-07       Impact factor: 5.917

8.  A genome scan for selection signatures in pigs.

Authors:  Yunlong Ma; Julong Wei; Qin Zhang; Lei Chen; Jinyong Wang; Jianfeng Liu; Xiangdong Ding
Journal:  PLoS One       Date:  2015-03-10       Impact factor: 3.240

9.  Maximum likelihood estimation of frequencies of known haplotypes from pooled sequence data.

Authors:  Darren Kessner; Thomas L Turner; John Novembre
Journal:  Mol Biol Evol       Date:  2013-01-30       Impact factor: 16.240

10.  LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data.

Authors:  Alison F Feder; Dmitri A Petrov; Alan O Bergland
Journal:  PLoS One       Date:  2012-11-09       Impact factor: 3.240

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