Literature DB >> 20848156

Function of chloroplast RNA-binding proteins.

Jessica Jacobs1, Ulrich Kück.   

Abstract

Chloroplasts are eukaryotic organelles which represent evolutionary chimera with proteins that have been derived from either a prokaryotic endosymbiont or a eukaryotic host. Chloroplast gene expression starts with transcription of RNA and is followed by multiple post-transcriptional processes which are mediated mainly by an as yet unknown number of RNA-binding proteins. Here, we review the literature to date on the structure and function of these chloroplast RNA-binding proteins. For example, the functional protein domains involved in RNA binding, such as the RNA-recognition motifs, the chloroplast RNA-splicing and ribosome maturation domains, and the pentatricopeptide-repeat motifs, are summarized. We also describe biochemical and forward genetic approaches that led to the identification of proteins modifying RNA stability or carrying out RNA splicing or editing. Such data will greatly contribute to a better understanding of the biogenesis of a unique organelle found in all photosynthetic organisms.

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Substances:

Year:  2010        PMID: 20848156     DOI: 10.1007/s00018-010-0523-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  138 in total

1.  Tracing the Thread of Plastid Diversity through the Tapestry of Life.

Authors: 
Journal:  Am Nat       Date:  1999-10       Impact factor: 3.926

2.  In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters.

Authors:  K Liere; P Maliga
Journal:  EMBO J       Date:  1999-01-04       Impact factor: 11.598

Review 3.  Organization and expression of organellar genomes.

Authors:  Adrian C Barbrook; Christopher J Howe; Davy P Kurniawan; Sarah J Tarr
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-03-12       Impact factor: 6.237

4.  Occurrence of plastid RNA editing in all major lineages of land plants.

Authors:  R Freyer; M C Kiefer-Meyer; H Kössel
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

Review 5.  Structural insights into RNA splicing.

Authors:  Navtej Toor; Kevin S Keating; Anna Marie Pyle
Journal:  Curr Opin Struct Biol       Date:  2009-05-13       Impact factor: 6.809

6.  Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing.

Authors:  Kenji Okuda; Fumiyoshi Myouga; Reiko Motohashi; Kazuo Shinozaki; Toshiharu Shikanai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-02       Impact factor: 11.205

7.  The pre-mRNA binding K protein contains a novel evolutionarily conserved motif.

Authors:  H Siomi; M J Matunis; W M Michael; G Dreyfuss
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

8.  MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis.

Authors:  Xenie Johnson; Katia Wostrikoff; Giovanni Finazzi; Richard Kuras; Christian Schwarz; Sandrine Bujaldon; Joerg Nickelsen; David B Stern; Francis-André Wollman; Olivier Vallon
Journal:  Plant Cell       Date:  2010-01-22       Impact factor: 11.277

9.  Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Authors:  Claire Lurin; Charles Andrés; Sébastien Aubourg; Mohammed Bellaoui; Frédérique Bitton; Clémence Bruyère; Michel Caboche; Cédrig Debast; José Gualberto; Beate Hoffmann; Alain Lecharny; Monique Le Ret; Marie-Laure Martin-Magniette; Hakim Mireau; Nemo Peeters; Jean-Pierre Renou; Boris Szurek; Ludivine Taconnat; Ian Small
Journal:  Plant Cell       Date:  2004-07-21       Impact factor: 11.277

10.  Specific roles of 5' RNA secondary structures in stabilizing transcripts in chloroplasts.

Authors:  Loreto Suay; Maria L Salvador; Emnet Abesha; Uwe Klein
Journal:  Nucleic Acids Res       Date:  2005-08-22       Impact factor: 16.971

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  16 in total

1.  Translational Regulation of Cytoplasmic mRNAs.

Authors:  Bijoyita Roy; Albrecht G von Arnim
Journal:  Arabidopsis Book       Date:  2013-07-18

2.  PUMPKIN, the Sole Plastid UMP Kinase, Associates with Group II Introns and Alters Their Metabolism.

Authors:  Lisa-Marie Schmid; Lisa Ohler; Torsten Möhlmann; Andreas Brachmann; Jose M Muiño; Dario Leister; Jörg Meurer; Nikolay Manavski
Journal:  Plant Physiol       Date:  2018-11-08       Impact factor: 8.340

3.  Identification of a chloroplast ribonucleoprotein complex containing trans-splicing factors, intron RNA, and novel components.

Authors:  Jessica Jacobs; Christina Marx; Vera Kock; Olga Reifschneider; Benjamin Fränzel; Christoph Krisp; Dirk Wolters; Ulrich Kück
Journal:  Mol Cell Proteomics       Date:  2013-04-04       Impact factor: 5.911

4.  Cold-induced cysts of the photosynthetic dinoflagellate Lingulodinium polyedrum have an arrested circadian bioluminescence rhythm and lower levels of protein phosphorylation.

Authors:  Sougata Roy; Louis Letourneau; David Morse
Journal:  Plant Physiol       Date:  2013-12-13       Impact factor: 8.340

5.  Organelle-nucleus cross-talk regulates plant intercellular communication via plasmodesmata.

Authors:  Tessa M Burch-Smith; Jacob O Brunkard; Yoon Gi Choi; Patricia C Zambryski
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

6.  Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps.

Authors:  Christiane Kupsch; Hannes Ruwe; Sandra Gusewski; Michael Tillich; Ian Small; Christian Schmitz-Linneweber
Journal:  Plant Cell       Date:  2012-10-30       Impact factor: 11.277

7.  Messenger RNA degradation is initiated at the 5' end and follows sequence- and condition-dependent modes in chloroplasts.

Authors:  Maria L Salvador; Loreto Suay; Uwe Klein
Journal:  Nucleic Acids Res       Date:  2011-04-20       Impact factor: 16.971

8.  Identification of Pentatricopeptide Repeat Proteins in the Model Organism Dictyostelium discoideum.

Authors:  Sam Manna; Jessica Brewster; Christian Barth
Journal:  Int J Genomics       Date:  2013-08-12       Impact factor: 2.326

9.  The mitochondrial genome of the prasinophyte Prasinoderma coloniale reveals two trans-spliced group I introns in the large subunit rRNA gene.

Authors:  Jean-François Pombert; Christian Otis; Monique Turmel; Claude Lemieux
Journal:  PLoS One       Date:  2013-12-26       Impact factor: 3.240

10.  Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves.

Authors:  Yi-Bin Lu; Yi-Ping Qi; Lin-Tong Yang; Jinwook Lee; Peng Guo; Xin Ye; Meng-Yang Jia; Mei-Li Li; Li-Song Chen
Journal:  Front Plant Sci       Date:  2015-07-28       Impact factor: 5.753

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