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Literature DB >> 20847740

Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure.

Ruth Bastow¹, Sabina Leonelli.

Abstract

Mesh：

Year: 2010 PMID： 20847740 PMCID： PMC2948195 DOI： 10.1038/embor.2010.145

Source DB: PubMed Journal: EMBO Rep ISSN： 1469-221X Impact factor: 8.807

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20 in total

1. Swiss-Prot: juggling between evolution and stability.

Authors: Amos Bairoch; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger
Journal: Brief Bioinform Date: 2004-03 Impact factor: 11.622

2. The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses.

Authors: Kiana Toufighi; Siobhan M Brady; Ryan Austin; Eugene Ly; Nicholas J Provart
Journal: Plant J Date: 2005-07 Impact factor: 6.417

Review 3. Web-queryable large-scale data sets for hypothesis generation in plant biology.

Authors: Siobhan M Brady; Nicholas J Provart
Journal: Plant Cell Date: 2009-04-28 Impact factor: 11.277

4. Philosophies of funding.

Authors: Maureen A O'Malley; Kevin C Elliott; Chris Haufe; Richard M Burian
Journal: Cell Date: 2009-08-21 Impact factor: 41.582

5. Models for financial sustainability of biological databases and resources.

Authors: Christina Chandras; Thomas Weaver; Michael Zouberakis; Damian Smedley; Klaus Schughart; Nadia Rosenthal; John M Hancock; George Kollias; Paul N Schofield; Vassilis Aidinis
Journal: Database (Oxford) Date: 2009-10-23 Impact factor: 3.451

6. Saccharomyces genome database: underlying principles and organisation.

Authors: Selina S Dwight; Rama Balakrishnan; Karen R Christie; Maria C Costanzo; Kara Dolinski; Stacia R Engel; Becket Feierbach; Dianna G Fisk; Jodi Hirschman; Eurie L Hong; Laurie Issel-Tarver; Robert S Nash; Anand Sethuraman; Barry Starr; Chandra L Theesfeld; Rey Andrada; Gail Binkley; Qing Dong; Christopher Lane; Mark Schroeder; Shuai Weng; David Botstein; J Michael Cherry
Journal: Brief Bioinform Date: 2004-03 Impact factor: 11.622

7. Genome re-annotation: a wiki solution?

Authors: Steven L Salzberg
Journal: Genome Biol Date: 2007 Impact factor: 13.583

8. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.

Authors: Helen Berman; Kim Henrick; Haruki Nakamura; John L Markley
Journal: Nucleic Acids Res Date: 2006-11-16 Impact factor: 16.971

9. The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources.

Authors: Guy R Cochrane; Michael Y Galperin
Journal: Nucleic Acids Res Date: 2009-12-03 Impact factor: 16.971

10. FlyBase: enhancing Drosophila Gene Ontology annotations.

Authors: Susan Tweedie; Michael Ashburner; Kathleen Falls; Paul Leyland; Peter McQuilton; Steven Marygold; Gillian Millburn; David Osumi-Sutherland; Andrew Schroeder; Ruth Seal; Haiyan Zhang
Journal: Nucleic Acids Res Date: 2008-10-23 Impact factor: 16.971

12 in total

1. ImageJS: Personalized, participated, pervasive, and reproducible image bioinformatics in the web browser.

Authors: Jonas S Almeida; Egiebade E Iriabho; Vijaya L Gorrepati; Sean R Wilkinson; Alexander Grüneberg; David E Robbins; James R Hackney
Journal: J Pathol Inform Date: 2012-07-20

2. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure.

Authors: Anna Flis; Aurora Piñas Fernández; Tomasz Zielinski; Virginie Mengin; Ronan Sulpice; Kevin Stratford; Alastair Hume; Alexandra Pokhilko; Megan M Southern; Daniel D Seaton; Harriet G McWatters; Mark Stitt; Karen J Halliday; Andrew J Millar
Journal: Open Biol Date: 2015-10 Impact factor: 6.411

3. From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.

Authors: Sefa Kılıç; Dinara M Sagitova; Shoshannah Wolfish; Benoit Bely; Mélanie Courtot; Stacy Ciufo; Tatiana Tatusova; Claire O'Donovan; Marcus C Chibucos; Maria J Martin; Ivan Erill
Journal: Database (Oxford) Date: 2016-04-25 Impact factor: 3.451

4. Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model.

Authors: Leonore Reiser; Tanya Z Berardini; Donghui Li; Robert Muller; Emily M Strait; Qian Li; Yarik Mezheritsky; Andrey Vetushko; Eva Huala
Journal: Database (Oxford) Date: 2016-03-17 Impact factor: 3.451