Literature DB >> 2082930

The game of the pentose phosphate cycle: a mathematical approach to study the optimization in design of metabolic pathways during evolution.

E Meléndez-Hevia1.   

Abstract

The optimization of the pathway structure of the pentose phosphate cycle is studied by means of abstraction to a model designed as a mathematical game of combinatorial optimization. The objective of the game is to convert pentoses into hexoses, which is the aim of the non-oxidative phase of the metabolic cycle, and it includes two kinds of hypotheses: (a) the hypothesis of the mechanisms based on the enzyme mechanisms available to cells, and (b) the hypothesis of simplicity which establishes that the optimal solution must have the least number of steps and the least number of carbons in every intermediate. A mathematical proof of the optimal solution of this problem is given, and it is demonstrated that such a solution is the same as occurs in cells. The Calvin cycle and the "L-type" of the pentose cycle are also studied by a similar method, and equivalent results are obtained. These results point out the role which the hypothesis of simplicity may have played in the evolution of metabolic pathways.

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Year:  1990        PMID: 2082930

Source DB:  PubMed          Journal:  Biomed Biochim Acta        ISSN: 0232-766X


  7 in total

1.  Activity and metabolic roles of the pentose phosphate cycle in several rat tissues.

Authors:  H Cabezas; R R Raposo; E Meléndez-Hevia
Journal:  Mol Cell Biochem       Date:  1999-11       Impact factor: 3.396

2.  Teaching the design principles of metabolism.

Authors:  Joshua D Rabinowitz; Livia Vastag
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 3.  How did glycogen structure evolve to satisfy the requirement for rapid mobilization of glucose? A problem of physical constraints in structure building.

Authors:  R Meléndez; E Meléndez-Hevia; M Cascante
Journal:  J Mol Evol       Date:  1997-10       Impact factor: 2.395

4.  The puzzle of the Krebs citric acid cycle: assembling the pieces of chemically feasible reactions, and opportunism in the design of metabolic pathways during evolution.

Authors:  E Meléndez-Hevia; T G Waddell; M Cascante
Journal:  J Mol Evol       Date:  1996-09       Impact factor: 2.395

5.  Network organization of cell metabolism: monosaccharide interconversion.

Authors:  J C Nuño; I Sánchez-Valdenebro; C Pérez-Iratxeta; E Meléndez-Hevia; F Montero
Journal:  Biochem J       Date:  1997-05-15       Impact factor: 3.857

6.  Optimization of molecular design in the evolution of metabolism: the glycogen molecule.

Authors:  E Meléndez-Hevia; T G Waddell; E D Shelton
Journal:  Biochem J       Date:  1993-10-15       Impact factor: 3.857

7.  Quantifying global tolerance of biochemical systems: design implications for moiety-transfer cycles.

Authors:  Pedro M B M Coelho; Armindo Salvador; Michael A Savageau
Journal:  PLoS Comput Biol       Date:  2009-03-20       Impact factor: 4.475

  7 in total

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