Literature DB >> 20023089

Soil microbial community responses to multiple experimental climate change drivers.

Hector F Castro1, Aimée T Classen, Emily E Austin, Richard J Norby, Christopher W Schadt.   

Abstract

Researchers agree that climate change factors such as rising atmospheric [CO2] and warming will likely interact to modify ecosystem properties and processes. However, the response of the microbial communities that regulate ecosystem processes is less predictable. We measured the direct and interactive effects of climatic change on soil fungal and bacterial communities (abundance and composition) in a multifactor climate change experiment that exposed a constructed old-field ecosystem to different atmospheric CO2 concentration (ambient, +300 ppm), temperature (ambient, +3 degrees C), and precipitation (wet and dry) might interact to alter soil bacterial and fungal abundance and community structure in an old-field ecosystem. We found that (i) fungal abundance increased in warmed treatments; (ii) bacterial abundance increased in warmed plots with elevated atmospheric [CO2] but decreased in warmed plots under ambient atmospheric [CO2]; (iii) the phylogenetic distribution of bacterial and fungal clones and their relative abundance varied among treatments, as indicated by changes in 16S rRNA and 28S rRNA genes; (iv) changes in precipitation altered the relative abundance of Proteobacteria and Acidobacteria, where Acidobacteria decreased with a concomitant increase in the Proteobacteria in wet relative to dry treatments; and (v) changes in precipitation altered fungal community composition, primarily through lineage specific changes within a recently discovered group known as soil clone group I. Taken together, our results indicate that climate change drivers and their interactions may cause changes in bacterial and fungal overall abundance; however, changes in precipitation tended to have a much greater effect on the community composition. These results illustrate the potential for complex community changes in terrestrial ecosystems under climate change scenarios that alter multiple factors simultaneously.

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Year:  2009        PMID: 20023089      PMCID: PMC2820983          DOI: 10.1128/AEM.02874-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  35 in total

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4.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

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5.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

6.  Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning.

Authors:  X Qiu; L Wu; H Huang; P E McDonel; A V Palumbo; J M Tiedje; J Zhou
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7.  Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods.

Authors:  E Smit; P Leeflang; S Gommans; J van den Broek; S van Mil; K Wernars
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8.  Temperature-dependent changes in the soil bacterial community in limed and unlimed soil.

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Journal:  FEMS Microbiol Ecol       Date:  2003-07-01       Impact factor: 4.194

9.  Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen.

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10.  Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species.

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Journal:  J Bacteriol       Date:  1990-08       Impact factor: 3.490

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  127 in total

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Journal:  Microb Ecol       Date:  2011-11-12       Impact factor: 4.552

2.  Microbial and geochemical assessment of bauxitic un-mined and post-mined chronosequence soils from Mocho Mountains, Jamaica.

Authors:  Dawn E Lewis; Ashvini Chauhan; John R White; Will Overholt; Stefan J Green; Puja Jasrotia; Denis Wafula; Charles Jagoe
Journal:  Microb Ecol       Date:  2012-03-04       Impact factor: 4.552

3.  Field-scale transplantation experiment to investigate structures of soil bacterial communities at pioneering sites.

Authors:  Anna Lazzaro; Andreas Gauer; Josef Zeyer
Journal:  Appl Environ Microbiol       Date:  2011-09-30       Impact factor: 4.792

4.  UniFrac: an effective distance metric for microbial community comparison.

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Journal:  ISME J       Date:  2010-09-09       Impact factor: 10.302

Review 5.  Microorganisms and climate change: terrestrial feedbacks and mitigation options.

Authors:  Brajesh K Singh; Richard D Bardgett; Pete Smith; Dave S Reay
Journal:  Nat Rev Microbiol       Date:  2010-11       Impact factor: 60.633

6.  Firing range soils yield a diverse array of fungal isolates capable of organic acid production and Pb mineral solubilization.

Authors:  Tarah S Sullivan; Neil R Gottel; Nicholas Basta; Philip M Jardine; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2012-06-22       Impact factor: 4.792

7.  Impacts of Long-Term Irrigation of Domestic Treated Wastewater on Soil Biogeochemistry and Bacterial Community Structure.

Authors:  Denis Wafula; John R White; Andy Canion; Charles Jagoe; Ashish Pathak; Ashvini Chauhan
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8.  Polysaccharide Degradation Capability of Actinomycetales Soil Isolates from a Semiarid Grassland of the Colorado Plateau.

Authors:  Chris M Yeager; La Verne Gallegos-Graves; John Dunbar; Cedar N Hesse; Hajnalka Daligault; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2017-03-02       Impact factor: 4.792

9.  Litter quality versus soil microbial community controls over decomposition: a quantitative analysis.

Authors:  Cory C Cleveland; Sasha C Reed; Adrienne B Keller; Diana R Nemergut; Sean P O'Neill; Rebecca Ostertag; Peter M Vitousek
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10.  Headwater Stream Microbial Diversity and Function across Agricultural and Urban Land Use Gradients.

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Journal:  Appl Environ Microbiol       Date:  2020-05-19       Impact factor: 4.792

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