Literature DB >> 20812758

Enzymatic interconversion of ammonia and nitrite: the right tool for the job.

Joshua Kostera1, Jennifer McGarry, A Andrew Pacheco.   

Abstract

Hydroxylamine oxidoreductase (HAO) from Nitrosomonas europaea normally catalyzes oxidation of NH(2)OH to NO(2)(-). This paper reports experiments in which HAO was thermodynamically poised to catalyze reduction of NO(2)(-) to NH(4)(+). HAO was found to catalyze the reduction of NO(2)(-) by methyl viologen monocation radical (MV(red)), displaying a hyperbolic dependence on NO(2)(-) concentration, with a k(cat1) of 6.8 ± 0.3 s(-1) and a K(m1) of 7.6 ± 0.9 mM. HAO also catalyzed the reduction of NH(2)OH by MV(red), with a hyperbolic dependence on NH(2)OH concentration, and a k(cat2) of 245 ± 3 s(-1) and a K(m2) of 6.8 ± 0.2 mM (k(cat1) and k(cat2) reflect the maximum number of electrons transferred from MV(red) per second). We had previously demonstrated that HAO catalyzes the reduction of NO by MV(red) to yield first NH(2)OH and then NH(4)(+). Thus, overall, HAO is seen to act like a cytochrome c nitrite reductase, which catalyzes the six-electron reduction of NO(2)(-) to NH(4)(+) by MV(red). In the presence of Ru(NH(3))(2+) (Ru(II)) and Ru(NH(3))(3+) (Ru(III)) at ratios exceeding 200:1, HAO exhibited no detectable Ru(II)-NO(2)(-) oxidoreductase activity, though such activity is thermodynamically favored. On the other hand, HAO could still catalyze the oxidation of NH(2)OH to NO by Ru(III) under these conditions. The oxidative process exhibited a hyperbolic dependence on NH(2)OH concentration, with a k(cat3) of 98 ± 3 s(-1) and a K(m3) of 5.2 ± 0.8 μM. Finally, HAO was found not to catalyze the disproportionation of NH(2)OH, despite the thermodynamic favorability of such a process, and the apparent opportunity presented by the HAO structure. Mechanisms are proposed to explain all the kinetic data.

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Year:  2010        PMID: 20812758     DOI: 10.1021/bi1006783

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Correlations between the Electronic Properties of Shewanella oneidensis Cytochrome c Nitrite Reductase (ccNiR) and Its Structure: Effects of Heme Oxidation State and Active Site Ligation.

Authors:  Natalia Stein; Daniel Love; Evan T Judd; Sean J Elliott; Brian Bennett; A Andrew Pacheco
Journal:  Biochemistry       Date:  2015-06-12       Impact factor: 3.162

2.  Why orange Guaymas Basin Beggiatoa spp. are orange: single-filament-genome-enabled identification of an abundant octaheme cytochrome with hydroxylamine oxidase, hydrazine oxidase, and nitrite reductase activities.

Authors:  Barbara J MacGregor; Jennifer F Biddle; Jason R Siebert; Eric Staunton; Eric L Hegg; Ann G Matthysse; Andreas Teske
Journal:  Appl Environ Microbiol       Date:  2012-12-07       Impact factor: 4.792

3.  Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system.

Authors:  Matthew Youngblut; Evan T Judd; Vukica Srajer; Bilal Sayyed; Tyler Goelzer; Sean J Elliott; Marius Schmidt; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2012-03-02       Impact factor: 3.358

4.  Upon further analysis, neither cytochrome c554 from Nitrosomonas europaea nor its F156A variant display NO reductase activity, though both proteins bind nitric oxide reversibly.

Authors:  Jennifer M McGarry; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2018-06-26       Impact factor: 3.358

Review 5.  Multi-heme proteins: nature's electronic multi-purpose tool.

Authors:  Kathryn D Bewley; Katie E Ellis; Mackenzie A Firer-Sherwood; Sean J Elliott
Journal:  Biochim Biophys Acta       Date:  2013-04-02

6.  Characterization of Anammox Hydrazine Dehydrogenase, a Key N2-producing Enzyme in the Global Nitrogen Cycle.

Authors:  Wouter J Maalcke; Joachim Reimann; Simon de Vries; Julea N Butt; Andreas Dietl; Nardy Kip; Ulrike Mersdorf; Thomas R M Barends; Mike S M Jetten; Jan T Keltjens; Boran Kartal
Journal:  J Biol Chem       Date:  2016-06-17       Impact factor: 5.157

7.  Shewanella oneidensis cytochrome c nitrite reductase (ccNiR) does not disproportionate hydroxylamine to ammonia and nitrite, despite a strongly favorable driving force.

Authors:  Matthew Youngblut; Daniel J Pauly; Natalia Stein; Daniel Walters; John A Conrad; Graham R Moran; Brian Bennett; A Andrew Pacheco
Journal:  Biochemistry       Date:  2014-03-28       Impact factor: 3.162

8.  Structural basis of biological NO generation by octaheme oxidoreductases.

Authors:  Wouter J Maalcke; Andreas Dietl; Sophie J Marritt; Julea N Butt; Mike S M Jetten; Jan T Keltjens; Thomas R M Barends; Boran Kartal
Journal:  J Biol Chem       Date:  2013-12-03       Impact factor: 5.157

9.  Nitrate ammonification by Nautilia profundicola AmH: experimental evidence consistent with a free hydroxylamine intermediate.

Authors:  Thomas E Hanson; Barbara J Campbell; Katie M Kalis; Mark A Campbell; Martin G Klotz
Journal:  Front Microbiol       Date:  2013-07-04       Impact factor: 5.640

10.  Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila.

Authors:  Wouter Versantvoort; Simon Guerrero-Cruz; Daan R Speth; Jeroen Frank; Lavinia Gambelli; Geert Cremers; Theo van Alen; Mike S M Jetten; Boran Kartal; Huub J M Op den Camp; Joachim Reimann
Journal:  Front Microbiol       Date:  2018-07-24       Impact factor: 5.640

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