Literature DB >> 27317665

Characterization of Anammox Hydrazine Dehydrogenase, a Key N2-producing Enzyme in the Global Nitrogen Cycle.

Wouter J Maalcke1, Joachim Reimann1, Simon de Vries2, Julea N Butt3, Andreas Dietl4, Nardy Kip1, Ulrike Mersdorf4, Thomas R M Barends4, Mike S M Jetten5, Jan T Keltjens1, Boran Kartal6.   

Abstract

Anaerobic ammonium-oxidizing (anammox) bacteria derive their energy for growth from the oxidation of ammonium with nitrite as the electron acceptor. N2, the end product of this metabolism, is produced from the oxidation of the intermediate, hydrazine (N2H4). Previously, we identified N2-producing hydrazine dehydrogenase (KsHDH) from the anammox organism Kuenenia stuttgartiensis as the gene product of kustc0694 and determined some of its catalytic properties. In the genome of K. stuttgartiensis, kustc0694 is one of 10 paralogs related to octaheme hydroxylamine (NH2OH) oxidoreductase (HAO). Here, we characterized KsHDH as a covalently cross-linked homotrimeric octaheme protein as found for HAO and HAO-related hydroxylamine-oxidizing enzyme kustc1061 from K. stuttgartiensis Interestingly, the HDH trimers formed octamers in solution, each octamer harboring an amazing 192 c-type heme moieties. Whereas HAO and kustc1061 are capable of hydrazine oxidation as well, KsHDH was highly specific for this activity. To understand this specificity, we performed detailed amino acid sequence analyses and investigated the catalytic and spectroscopic (electronic absorbance, EPR) properties of KsHDH in comparison with the well defined HAO and kustc1061. We conclude that HDH specificity is most likely derived from structural changes around the catalytic heme 4 (P460) and of the electron-wiring circuit comprising seven His/His-ligated c-type hemes in each subunit. These nuances make HDH a globally prominent N2-producing enzyme, next to nitrous oxide (N2O) reductase from denitrifying microorganisms.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  anaerobic ammonium oxidation; electron paramagnetic resonance (EPR); enzyme kinetics; enzyme purification; hydrazine; nitrogen metabolism; octaheme proteins; reactive nitrogen species (RNS)

Mesh:

Substances:

Year:  2016        PMID: 27317665      PMCID: PMC5016112          DOI: 10.1074/jbc.M116.735530

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

Review 1.  Anammox--growth physiology, cell biology, and metabolism.

Authors:  Boran Kartal; Laura van Niftrik; Jan T Keltjens; Huub J M Op den Camp; Mike S M Jetten
Journal:  Adv Microb Physiol       Date:  2012       Impact factor: 3.517

2.  Isolation of a multiheme protein with features of a hydrazine-oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture.

Authors:  Munetaka Shimamura; Takashi Nishiyama; Hiroyuki Shigetomo; Takeshi Toyomoto; Yuka Kawahara; Kenji Furukawa; Takao Fujii
Journal:  Appl Environ Microbiol       Date:  2006-12-15       Impact factor: 4.792

3.  Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria.

Authors:  Martin G Klotz; Markus C Schmid; Marc Strous; Huub J M op den Camp; Mike S M Jetten; Alan B Hooper
Journal:  Environ Microbiol       Date:  2008-08-28       Impact factor: 5.491

4.  The 2.8 A structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea.

Authors:  N Igarashi; H Moriyama; T Fujiwara; Y Fukumori; N Tanaka
Journal:  Nat Struct Biol       Date:  1997-04

Review 5.  Denitrification, anammox, and N₂ production in marine sediments.

Authors:  Allan H Devol
Journal:  Ann Rev Mar Sci       Date:  2015

6.  The inner workings of the hydrazine synthase multiprotein complex.

Authors:  Andreas Dietl; Christina Ferousi; Wouter J Maalcke; Andreas Menzel; Simon de Vries; Jan T Keltjens; Mike S M Jetten; Boran Kartal; Thomas R M Barends
Journal:  Nature       Date:  2015-10-19       Impact factor: 49.962

7.  Molecular mechanism of anaerobic ammonium oxidation.

Authors:  Boran Kartal; Wouter J Maalcke; Naomi M de Almeida; Irina Cirpus; Jolein Gloerich; Wim Geerts; Huub J M Op den Camp; Harry R Harhangi; Eva M Janssen-Megens; Kees-Jan Francoijs; Hendrik G Stunnenberg; Jan T Keltjens; Mike S M Jetten; Marc Strous
Journal:  Nature       Date:  2011-10-02       Impact factor: 49.962

8.  Structural studies of hydroxylamine oxidoreductase reveal a unique heme cofactor and a previously unidentified interaction partner.

Authors:  Peder Cedervall; Alan B Hooper; Carrie M Wilmot
Journal:  Biochemistry       Date:  2013-08-26       Impact factor: 3.162

Review 9.  Biological significance and applications of heme c proteins and peptides.

Authors:  Jesse G Kleingardner; Kara L Bren
Journal:  Acc Chem Res       Date:  2015-06-17       Impact factor: 22.384

10.  Correlation of optical and EPR signals with the P460 heme of hydroxylamine oxidoreductase from Nitrosomonas europaea.

Authors:  D M Arciero; A Golombek; M P Hendrich; A B Hooper
Journal:  Biochemistry       Date:  1998-01-13       Impact factor: 3.162

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  17 in total

Review 1.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

2.  Discovery of a functional, contracted heme-binding motif within a multiheme cytochrome.

Authors:  Christina Ferousi; Simon Lindhoud; Frauke Baymann; Eric R Hester; Joachim Reimann; Boran Kartal
Journal:  J Biol Chem       Date:  2019-10-03       Impact factor: 5.157

Review 3.  The microbial nitrogen-cycling network.

Authors:  Marcel M M Kuypers; Hannah K Marchant; Boran Kartal
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

4.  A nitric oxide-binding heterodimeric cytochrome c complex from the anammox bacterium Kuenenia stuttgartiensis binds to hydrazine synthase.

Authors:  Mohd Akram; Joachim Reimann; Andreas Dietl; Andreas Menzel; Wouter Versantvoort; Boran Kartal; Mike S M Jetten; Thomas R M Barends
Journal:  J Biol Chem       Date:  2019-09-22       Impact factor: 5.157

5.  Influences of the heme-lysine crosslink in cytochrome P460 over redox catalysis and nitric oxide sensitivity.

Authors:  Avery C Vilbert; Jonathan D Caranto; Kyle M Lancaster
Journal:  Chem Sci       Date:  2017-11-07       Impact factor: 9.825

6.  Metagenomic potential for and diversity of N-cycle driving microorganisms in the Bothnian Sea sediment.

Authors:  Olivia Rasigraf; Julia Schmitt; Mike S M Jetten; Claudia Lüke
Journal:  Microbiologyopen       Date:  2017-05-23       Impact factor: 3.139

7.  Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria.

Authors:  Daan R Speth; Ilias Lagkouvardos; Yong Wang; Pei-Yuan Qian; Bas E Dutilh; Mike S M Jetten
Journal:  Microb Ecol       Date:  2017-01-10       Impact factor: 4.552

8.  A 192-heme electron transfer network in the hydrazine dehydrogenase complex.

Authors:  M Akram; A Dietl; U Mersdorf; S Prinz; W Maalcke; J Keltjens; C Ferousi; N M de Almeida; J Reimann; B Kartal; M S M Jetten; K Parey; T R M Barends
Journal:  Sci Adv       Date:  2019-04-17       Impact factor: 14.136

9.  Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria.

Authors:  Dario R Shaw; Muhammad Ali; Krishna P Katuri; Jeffrey A Gralnick; Joachim Reimann; Rob Mesman; Laura van Niftrik; Mike S M Jetten; Pascal E Saikaly
Journal:  Nat Commun       Date:  2020-04-28       Impact factor: 14.919

10.  The Discovery of Twenty-Eight New Encapsulin Sequences, Including Three in Anammox Bacteria.

Authors:  John C Tracey; Maricela Coronado; Tobias W Giessen; Maggie C Y Lau; Pamela A Silver; Bess B Ward
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

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