Literature DB >> 20805043

Filtered multitensor tractography.

James G Malcolm1, Martha E Shenton, Yogesh Rathi.   

Abstract

We describe a technique that uses tractography to drive the local fiber model estimation. Existing techniques use independent estimation at each voxel so there is no running knowledge of confidence in the estimated model fit. We formulate fiber tracking as recursive estimation: at each step of tracing the fiber, the current estimate is guided by those previous. To do this we perform tractography within a filter framework and use a discrete mixture of Gaussian tensors to model the signal. Starting from a seed point, each fiber is traced to its termination using an unscented Kalman filter to simultaneously fit the local model to the signal and propagate in the most consistent direction. Despite the presence of noise and uncertainty, this provides a causal estimate of the local structure at each point along the fiber. Using two- and three-fiber models we demonstrate in synthetic experiments that this approach significantly improves the angular resolution at crossings and branchings. In vivo experiments confirm the ability to trace through regions known to contain such crossing and branching while providing inherent path regularization.

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Mesh:

Year:  2010        PMID: 20805043      PMCID: PMC3045040          DOI: 10.1109/TMI.2010.2048121

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  39 in total

1.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
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2.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

3.  Two-tensor tractography using a constrained filter.

Authors:  James G Malcolm; Martha E Shenton; Yogesh Rathi
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  A novel global tractography algorithm based on an adaptive spin glass model.

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5.  A Bayesian approach for stochastic white matter tractography.

Authors:  Ola Friman; Gunnar Farnebäck; Carl-Fredrik Westin
Journal:  IEEE Trans Med Imaging       Date:  2006-08       Impact factor: 10.048

Review 6.  Multiple-fiber reconstruction algorithms for diffusion MRI.

Authors:  Daniel C Alexander
Journal:  Ann N Y Acad Sci       Date:  2005-12       Impact factor: 5.691

7.  Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

Authors:  Christopher P Hess; Pratik Mukherjee; Eric T Han; Duan Xu; Daniel B Vigneron
Journal:  Magn Reson Med       Date:  2006-07       Impact factor: 4.668

8.  Diffusion k-tensor estimation from Q-ball imaging using discretized principal axes.

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9.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

10.  Estimating crossing fibers: a tensor decomposition approach.

Authors:  Thomas Schultz; Hans-Peter Seidel
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

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  71 in total

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Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

2.  Abnormalities in white matter tracts in the fronto-striatal-thalamic circuit are associated with verbal performance in 22q11.2DS.

Authors:  Carina Heller; Saskia Steinmann; James J Levitt; Nikos Makris; Kevin M Antshel; Wanda Fremont; Ioana L Coman; Stefan R Schweinberger; Thomas Weiß; Sylvain Bouix; Marek R Kubicki; Wendy R Kates; Zora Kikinis
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3.  Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects.

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Journal:  J Neuroimaging       Date:  2018-01-10       Impact factor: 2.486

4.  A full bi-tensor neural tractography algorithm using the unscented Kalman filter.

Authors:  Stefan Lienhard; James G Malcolm; Carl-Frederik Westin; Yogesh Rathi
Journal:  EURASIP J Adv Signal Process       Date:  2011-01-01

5.  Longitudinal diffusion changes in prodromal and early HD: Evidence of white-matter tract deterioration.

Authors:  Joseph J Shaffer; Ali Ghayoor; Jeffrey D Long; Regina Eun-Young Kim; Spencer Lourens; Lauren J O'Donnell; Carl-Fredrik Westin; Yogesh Rathi; Vincent Magnotta; Jane S Paulsen; Hans J Johnson
Journal:  Hum Brain Mapp       Date:  2017-01-03       Impact factor: 5.038

6.  Genetic load determines atrophy in hand cortico-striatal pathways in presymptomatic Huntington's disease.

Authors:  Yi Hong; Lauren J O'Donnell; Peter Savadjiev; Fan Zhang; Demian Wassermann; Ofer Pasternak; Hans Johnson; Jane Paulsen; Jean-Paul Vonsattel; Nikos Makris; Carl F Westin; Yogesh Rathi
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7.  Fusion of white and gray matter geometry: a framework for investigating brain development.

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8.  Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation.

Authors:  Fan Zhang; Suheyla Cetin Karayumak; Nico Hoffmann; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Med Image Anal       Date:  2020-06-24       Impact factor: 8.545

9.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Laura Rigolo; Yogesh Rathi; Nikos Makris; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

10.  Probabilistic tractography using Lasso bootstrap.

Authors:  Chuyang Ye; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-09-16       Impact factor: 8.545

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