Literature DB >> 20426073

Two-tensor tractography using a constrained filter.

James G Malcolm1, Martha E Shenton, Yogesh Rathi.   

Abstract

We describe a technique to simultaneously estimate a weighted, positive-definite multi-tensor fiber model and perform tractography. Existing techniques estimate the local fiber orientation at each voxel independently so there is no running knowledge of confidence in the estimated fiber model. We formulate fiber tracking as recursive estimation: at each step of tracing the fiber, the current estimate is guided by the previous. To do this we model the signal as a weighted mixture of Gaussian tensors and perform tractography within a filter framework. Starting from a seed point, each fiber is traced to its termination using an unscented Kalman filter to simultaneously fit the local model and propagate in the most consistent direction. Further, we modify the Kalman filter to enforce model constraints, i.e. positive eigenvalues and convex weights. Despite the presence of noise and uncertainty, this provides a causal estimate of the local structure at each point along the fiber. Synthetic experiments demonstrate that this approach significantly improves the angular resolution at crossings and branchings while consistently estimating the mixture weights. In vivo experiments confirm the ability to trace out fibers in areas known to contain such crossing and branching while providing inherent path regularization.

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Year:  2009        PMID: 20426073      PMCID: PMC2893231          DOI: 10.1007/978-3-642-04268-3_110

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  16 in total

1.  Analysis of partial volume effects in diffusion-tensor MRI.

Authors:  A L Alexander; K M Hasan; M Lazar; J S Tsuruda; D L Parker
Journal:  Magn Reson Med       Date:  2001-05       Impact factor: 4.668

2.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

3.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

4.  How accurately can the diffusion profiles indicate multiple fiber orientations? A study on general fiber crossings in diffusion MRI.

Authors:  Wang Zhan; Yihong Yang
Journal:  J Magn Reson       Date:  2006-09-11       Impact factor: 2.229

5.  Geometrically constrained two-tensor model for crossing tracts in DWI.

Authors:  Sharon Peled; Ola Friman; Ferenc Jolesz; Carl-Fredrik Westin
Journal:  Magn Reson Imaging       Date:  2006-09-12       Impact factor: 2.546

6.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

7.  Probabilistic fiber tracking using particle filtering.

Authors:  Fan Zhang; Casey Goodlett; Edwin Hancock; Guido Gerig
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

8.  Parametric spherical deconvolution: inferring anatomical connectivity using diffusion MR imaging.

Authors:  Enrico Kaden; Thomas R Knösche; Alfred Anwander
Journal:  Neuroimage       Date:  2007-05-18       Impact factor: 6.556

9.  Estimating crossing fibers: a tensor decomposition approach.

Authors:  Thomas Schultz; Hans-Peter Seidel
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

10.  Fiber tracking from DTI using linear state space models: detectability of the pyramidal tract.

Authors:  C Gössl; L Fahrmeir; B Pütz; L M Auer; D P Auer
Journal:  Neuroimage       Date:  2002-06       Impact factor: 6.556

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  5 in total

1.  Statistical analysis of fiber bundles using multi-tensor tractography: application to first-episode schizophrenia.

Authors:  Yogesh Rathi; Marek Kubicki; Sylvain Bouix; Carl-Fredrik Westin; Jill Goldstein; Larry Seidman; Raquelle Mesholam-Gately; Robert W McCarley; Martha E Shenton
Journal:  Magn Reson Imaging       Date:  2011-01-31       Impact factor: 2.546

Review 2.  Diffusion tensor imaging and beyond.

Authors:  Jacques-Donald Tournier; Susumu Mori; Alexander Leemans
Journal:  Magn Reson Med       Date:  2011-04-05       Impact factor: 4.668

3.  Filtered multitensor tractography.

Authors:  James G Malcolm; Martha E Shenton; Yogesh Rathi
Journal:  IEEE Trans Med Imaging       Date:  2010-09       Impact factor: 10.048

4.  Localized abnormalities in the cingulum bundle in patients with schizophrenia: a Diffusion Tensor tractography study.

Authors:  Thomas J Whitford; Sun Woo Lee; Jungsu S Oh; Rodrigo de Luis-Garcia; Peter Savadjiev; Jorge L Alvarado; Carl-Fredrik Westin; Margaret Niznikiewicz; Paul G Nestor; Robert W McCarley; Marek Kubicki; Martha E Shenton
Journal:  Neuroimage Clin       Date:  2014-06-17       Impact factor: 4.881

5.  Joint Multi-Fiber NODDI Parameter Estimation and Tractography Using the Unscented Information Filter.

Authors:  Chinthala P Reddy; Yogesh Rathi
Journal:  Front Neurosci       Date:  2016-04-20       Impact factor: 4.677

  5 in total

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