Literature DB >> 20798056

H-NS forms a superhelical protein scaffold for DNA condensation.

Stefan T Arold1, Paul G Leonard, Gary N Parkinson, John E Ladbury.   

Abstract

The histone-like nucleoid structuring (H-NS) protein plays a fundamental role in DNA condensation and is a key regulator of enterobacterial gene expression in response to changes in osmolarity, pH, and temperature. The protein is capable of high-order self-association via interactions of its oligomerization domain. Using crystallography, we have solved the structure of this complete domain in an oligomerized state. The observed superhelical structure establishes a mechanism for the self-association of H-NS via both an N-terminal antiparallel coiled-coil and a second, hitherto unidentified, helix-turn-helix dimerization interface at the C-terminal end of the oligomerization domain. The helical scaffold suggests the formation of a H-NS:plectonemic DNA nucleoprotein complex that is capable of explaining published biophysical and functional data, and establishes a unifying structural basis for coordinating the DNA packaging and transcription repression functions of H-NS.

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Year:  2010        PMID: 20798056      PMCID: PMC2936596          DOI: 10.1073/pnas.1006966107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  The H-NS dimerization domain defines a new fold contributing to DNA recognition.

Authors:  Vanessa Bloch; Yinshan Yang; Emmanuel Margeat; Alain Chavanieu; Marie Thérèse Augé; Bruno Robert; Stefan Arold; Sylvie Rimsky; Michel Kochoyan
Journal:  Nat Struct Biol       Date:  2003-03

2.  H-NS oligomerization domain structure reveals the mechanism for high order self-association of the intact protein.

Authors:  Diego Esposito; Arsen Petrovic; Richard Harris; Shusuke Ono; John F Eccleston; Amina Mbabaali; Ihtshamul Haq; Christopher F Higgins; Jay C D Hinton; Paul C Driscoll; John E Ladbury
Journal:  J Mol Biol       Date:  2002-12-06       Impact factor: 5.469

3.  Macromolecular TLS refinement in REFMAC at moderate resolutions.

Authors:  Martyn D Winn; Garib N Murshudov; Miroslav Z Papiz
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

4.  ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.

Authors:  Karsten Suhre; Yves-Henri Sanejouand
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 5.  Structure of the histone-like protein H-NS and its role in regulation and genome superstructure.

Authors:  Sylvie Rimsky
Journal:  Curr Opin Microbiol       Date:  2004-04       Impact factor: 7.934

Review 6.  H-NS: a universal regulator for a dynamic genome.

Authors:  Charles J Dorman
Journal:  Nat Rev Microbiol       Date:  2004-05       Impact factor: 60.633

7.  Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria.

Authors:  C S Hulton; A Seirafi; J C Hinton; J M Sidebotham; L Waddell; G D Pavitt; T Owen-Hughes; A Spassky; H Buc; C F Higgins
Journal:  Cell       Date:  1990-11-02       Impact factor: 41.582

8.  Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli.

Authors:  H Shindo; T Iwaki; R Ieda; H Kurumizaka; C Ueguchi; T Mizuno; S Morikawa; H Nakamura; H Kuboniwa
Journal:  FEBS Lett       Date:  1995-02-27       Impact factor: 4.124

9.  Crystal structure of the N-terminal dimerisation domain of VicH, the H-NS-like protein of Vibrio cholerae.

Authors:  Rachel Cerdan; Vanessa Bloch; Yinshan Yang; Philippe Bertin; Christian Dumas; Sylvie Rimsky; Michel Kochoyan; Stefan T Arold
Journal:  J Mol Biol       Date:  2003-11-21       Impact factor: 5.469

10.  Evidence for a regulatory function of the histone-like Escherichia coli protein H-NS in ribosomal RNA synthesis.

Authors:  D Tippner; H Afflerbach; C Bradaczek; R Wagner
Journal:  Mol Microbiol       Date:  1994-02       Impact factor: 3.501

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  77 in total

Review 1.  H-NS Regulates Gene Expression and Compacts the Nucleoid: Insights from Single-Molecule Experiments.

Authors:  Ricksen S Winardhi; Jie Yan; Linda J Kenney
Journal:  Biophys J       Date:  2015-10-06       Impact factor: 4.033

2.  The 5.5 protein of phage T7 inhibits H-NS through interactions with the central oligomerization domain.

Authors:  Sabrina S Ali; Emily Beckett; Sandy Jeehoon Bae; William Wiley Navarre
Journal:  J Bacteriol       Date:  2011-07-15       Impact factor: 3.490

3.  Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins.

Authors:  Shivalika Saxena; J Gowrishankar
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

4.  A Three-protein Charge Zipper Stabilizes a Complex Modulating Bacterial Gene Silencing.

Authors:  Tiago N Cordeiro; Jesús García; Pau Bernadó; Oscar Millet; Miquel Pons
Journal:  J Biol Chem       Date:  2015-06-17       Impact factor: 5.157

5.  Function of the Histone-Like Protein H-NS in Motility of Escherichia coli: Multiple Regulatory Roles Rather than Direct Action at the Flagellar Motor.

Authors:  Eun A Kim; David F Blair
Journal:  J Bacteriol       Date:  2015-07-20       Impact factor: 3.490

6.  A single molecule analysis of H-NS uncouples DNA binding affinity from DNA specificity.

Authors:  Ranjit Gulvady; Yunfeng Gao; Linda J Kenney; Jie Yan
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

7.  A model of H-NS mediated compaction of bacterial DNA.

Authors:  Marc Joyeux; Jocelyne Vreede
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

8.  Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins.

Authors:  Liang Qin; Fredj Ben Bdira; Yann G J Sterckx; Alexander N Volkov; Jocelyne Vreede; Gabriele Giachin; Peter van Schaik; Marcellus Ubbink; Remus T Dame
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

9.  Regulation of Expression of Uropathogenic Escherichia coli Nonfimbrial Adhesin TosA by PapB Homolog TosR in Conjunction with H-NS and Lrp.

Authors:  Michael D Engstrom; Harry L T Mobley
Journal:  Infect Immun       Date:  2016-01-11       Impact factor: 3.441

10.  Transcriptional cross-regulation between Gram-negative and gram-positive bacteria, demonstrated using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum.

Authors:  Carmelita N Marbaniang; J Gowrishankar
Journal:  J Bacteriol       Date:  2012-08-17       Impact factor: 3.490

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