Literature DB >> 31925429

Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins.

Liang Qin1,2, Fredj Ben Bdira1,2, Yann G J Sterckx3, Alexander N Volkov4,5, Jocelyne Vreede6, Gabriele Giachin7, Peter van Schaik1,2, Marcellus Ubbink1, Remus T Dame1,2.   

Abstract

H-NS proteins act as osmotic sensors translating changes in osmolarity into altered DNA binding properties, thus, regulating enterobacterial genome organization and genes transcription. The molecular mechanism underlying the switching process and its conservation among <span class="Chemical">H-NS family members remains elusive. Here, we focus on the H-NS family protein MvaT from Pseudomonas aeruginosa and demonstrate experimentally that its protomer exists in two different conformations, corresponding to two different functional states. In the half-opened state (dominant at low salt) the protein forms filaments along DNA, in the fully opened state (dominant at high salt) the protein bridges DNA. This switching is a direct effect of ionic strength on electrostatic interactions between the oppositely charged DNA binding and N-terminal domains of MvaT. The asymmetric charge distribution and intramolecular interactions are conserved among the H-NS family of proteins. Therefore, our study establishes a general paradigm for the molecular mechanistic basis of the osmosensitivity of H-NS proteins.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 31925429      PMCID: PMC7039000          DOI: 10.1093/nar/gkz1226

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  71 in total

Review 1.  H-NS: a universal regulator for a dynamic genome.

Authors:  Charles J Dorman
Journal:  Nat Rev Microbiol       Date:  2004-05       Impact factor: 60.633

Review 2.  Silencing of foreign DNA in bacteria.

Authors:  Sabrina S Ali; Bin Xia; Jun Liu; William Wiley Navarre
Journal:  Curr Opin Microbiol       Date:  2012-01-20       Impact factor: 7.934

3.  Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella.

Authors:  William Wiley Navarre; Steffen Porwollik; Yipeng Wang; Michael McClelland; Henry Rosen; Stephen J Libby; Ferric C Fang
Journal:  Science       Date:  2006-06-08       Impact factor: 47.728

4.  Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase.

Authors:  Taku Oshima; Shu Ishikawa; Ken Kurokawa; Hirofumi Aiba; Naotake Ogasawara
Journal:  DNA Res       Date:  2006-10-17       Impact factor: 4.458

5.  Biofilm formation in Pseudomonas aeruginosa: fimbrial cup gene clusters are controlled by the transcriptional regulator MvaT.

Authors:  Isabelle Vallet; Stephen P Diggle; Rachael E Stacey; Miguel Cámara; Isabelle Ventre; Stephen Lory; Andrée Lazdunski; Paul Williams; Alain Filloux
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490

6.  H-NS uses an autoinhibitory conformational switch for environment-controlled gene silencing.

Authors:  Umar F Shahul Hameed; Chenyi Liao; Anand K Radhakrishnan; Franceline Huser; Safia S Aljedani; Xiaochuan Zhao; Afaque A Momin; Fernando A Melo; Xianrong Guo; Claire Brooks; Yu Li; Xuefeng Cui; Xin Gao; John E Ladbury; Łukasz Jaremko; Mariusz Jaremko; Jianing Li; Stefan T Arold
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

Review 7.  Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

Authors:  G Marius Clore; Junji Iwahara
Journal:  Chem Rev       Date:  2009-09       Impact factor: 60.622

8.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

9.  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Authors:  Woonghee Lee; Marco Tonelli; John L Markley
Journal:  Bioinformatics       Date:  2014-12-12       Impact factor: 6.937

10.  A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT.

Authors:  Pengfei Ding; Kirsty A McFarland; Shujuan Jin; Grace Tong; Bo Duan; Ally Yang; Timothy R Hughes; Jun Liu; Simon L Dove; William Wiley Navarre; Bin Xia
Journal:  PLoS Pathog       Date:  2015-06-11       Impact factor: 6.823

View more
  8 in total

1.  Histone-like Nucleoid-Structuring Protein (H-NS) Paralogue StpA Activates the Type I-E CRISPR-Cas System against Natural Transformation in Escherichia coli.

Authors:  Dongchang Sun; Xudan Mao; Mingyue Fei; Ziyan Chen; Tingheng Zhu; Juanping Qiu
Journal:  Appl Environ Microbiol       Date:  2020-07-02       Impact factor: 4.792

2.  Molecular Basis for Environment Sensing by a Nucleoid-Structuring Bacterial Protein Filament.

Authors:  Xiaochuan Zhao; Jacob M Remington; Severin T Schneebeli; Stefan T Arold; Jianing Li
Journal:  J Phys Chem Lett       Date:  2021-08-12       Impact factor: 6.888

3.  Bacterial H-NS contacts DNA at the same irregularly spaced sites in both bridged and hemi-sequestered linear filaments.

Authors:  Beth A Shen; Christine M Hustmyer; Daniel Roston; Michael B Wolfe; Robert Landick
Journal:  iScience       Date:  2022-05-18

4.  System-Wide Analysis of the GATC-Binding Nucleoid-Associated Protein Gbn and Its Impact on Streptomyces Development.

Authors:  Chao Du; Joost Willemse; Amanda M Erkelens; Victor J Carrion; Remus T Dame; Gilles P van Wezel
Journal:  mSystems       Date:  2022-05-16       Impact factor: 7.324

5.  Impact of Self-Association on the Architectural Properties of Bacterial Nucleoid Proteins.

Authors:  Marc Joyeux
Journal:  Biophys J       Date:  2020-12-17       Impact factor: 4.033

6.  Novel anti-repression mechanism of H-NS proteins by a phage protein.

Authors:  Fredj Ben Bdira; Amanda M Erkelens; Liang Qin; Alexander N Volkov; Andrew M Lippa; Nicholas Bowring; Aimee L Boyle; Marcellus Ubbink; Simon L Dove; Remus T Dame
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

7.  Direct visualization of the effect of DNA structure and ionic conditions on HU-DNA interactions.

Authors:  Szu-Ning Lin; Remus T Dame; Gijs J L Wuite
Journal:  Sci Rep       Date:  2021-09-16       Impact factor: 4.379

8.  Interplay between Nucleoid-Associated Proteins and Transcription Factors in Controlling Specialized Metabolism in Streptomyces.

Authors:  Xiafei Zhang; Sara N Andres; Marie A Elliot
Journal:  mBio       Date:  2021-07-27       Impact factor: 7.867

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.