Literature DB >> 20739007

Unlocking the eukaryotic membrane protein structural proteome.

John Kyongwon Lee1, Robert Michael Stroud.   

Abstract

Most of the 231 unique membrane protein structures (as of 3/2010) are of bacterial membrane proteins (MPs) expressed in bacteria, or eukaryotic MPs from natural sources. However eukaryotic membrane proteins, especially those with more than three membrane crossings rarely succumb to any suitable expression in bacterial cells. They typically require expression in eukaryotic cells that can provide appropriate endoplasmic reticulum, chaperones, targeting and post-translational processing. In evidence, only approximately 20 eukaryotic MP structures have resulted from heterologous expression. This is required for a general approach to target particular human or pathogen membrane proteins of importance to human health. The first of these appeared in 2005. Our review addresses the special issues that pertain to the expression of eukaryotic and human membrane proteins, and recent advances in the tool kit for crystallization and structure determination. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20739007      PMCID: PMC3530418          DOI: 10.1016/j.sbi.2010.05.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  46 in total

1.  New roles for structure in biology and drug discovery.

Authors:  R B Russell; D S Eggleston
Journal:  Nat Struct Biol       Date:  2000-11

Review 2.  Crystallisation of membrane proteins mediated by antibody fragments.

Authors:  Carola Hunte; Hartmut Michel
Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

3.  Crystal structure of a mammalian voltage-dependent Shaker family K+ channel.

Authors:  Stephen B Long; Ernest B Campbell; Roderick Mackinnon
Journal:  Science       Date:  2005-07-07       Impact factor: 47.728

4.  Evaluation of detergents for the soluble expression of alpha-helical and beta-barrel-type integral membrane proteins by a preparative scale individual cell-free expression system.

Authors:  Christian Klammt; Daniel Schwarz; Klaus Fendler; Winfried Haase; Volker Dötsch; Frank Bernhard
Journal:  FEBS J       Date:  2005-12       Impact factor: 5.542

5.  Crystals of an antibody Fv fragment against an integral membrane protein diffracting to 1.28 A resolution.

Authors:  C Ostermeier; L O Essen; H Michel
Journal:  Proteins       Date:  1995-01

6.  Expression of G protein coupled receptors in a cell-free translational system using detergents and thioredoxin-fusion vectors.

Authors:  Goshi Ishihara; Mie Goto; Mihoro Saeki; Kaori Ito; Tetsuya Hori; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  Protein Expr Purif       Date:  2005-05       Impact factor: 1.650

7.  Structure and function in rhodopsin: high-level expression of rhodopsin with restricted and homogeneous N-glycosylation by a tetracycline-inducible N-acetylglucosaminyltransferase I-negative HEK293S stable mammalian cell line.

Authors:  Philip J Reeves; Nico Callewaert; Roland Contreras; H Gobind Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

8.  High level cell-free expression and specific labeling of integral membrane proteins.

Authors:  Christian Klammt; Frank Löhr; Birgit Schäfer; Winfried Haase; Volker Dötsch; Heinz Rüterjans; Clemens Glaubitz; Frank Bernhard
Journal:  Eur J Biochem       Date:  2004-02

9.  Optimization of membrane protein overexpression and purification using GFP fusions.

Authors:  David Drew; Mirjam Lerch; Edmund Kunji; Dirk-Jan Slotboom; Jan-Willem de Gier
Journal:  Nat Methods       Date:  2006-04       Impact factor: 28.547

10.  Pore architecture and ion sites in acid-sensing ion channels and P2X receptors.

Authors:  Eric B Gonzales; Toshimitsu Kawate; Eric Gouaux
Journal:  Nature       Date:  2009-07-30       Impact factor: 49.962

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  13 in total

Review 1.  Crystallization chaperone strategies for membrane proteins.

Authors:  Raquel L Lieberman; Jeffrey A Culver; Kevin C Entzminger; Jennifer C Pai; Jennifer A Maynard
Journal:  Methods       Date:  2011-08-11       Impact factor: 3.608

2.  Protein Crystallography from the Perspective of Technology Developments.

Authors:  Xiao-Dong Su; Heng Zhang; Thomas C Terwilliger; Anders Liljas; Junyu Xiao; Yuhui Dong
Journal:  Crystallogr Rev       Date:  2015       Impact factor: 2.467

3.  Heterologous expression of functional G-protein-coupled receptors in Caenorhabditis elegans.

Authors:  David Salom; Pengxiu Cao; Wenyu Sun; Kristopher Kramp; Beata Jastrzebska; Hui Jin; Zhaoyang Feng; Krzysztof Palczewski
Journal:  FASEB J       Date:  2011-11-16       Impact factor: 5.191

4.  Large-scale identification of membrane proteins with properties favorable for crystallization.

Authors:  Jared Kim; Allison Kagawa; Kellie Kurasaki; Niloufar Ataie; Il Kyu Cho; Qing X Li; Ho Leung Ng
Journal:  Protein Sci       Date:  2015-08-27       Impact factor: 6.725

5.  Multicolour fluorescence-detection size-exclusion chromatography for structural genomics of membrane multiprotein complexes.

Authors:  David Parcej; Renate Guntrum; Sabine Schmidt; Andreas Hinz; Robert Tampé
Journal:  PLoS One       Date:  2013-06-25       Impact factor: 3.240

6.  Frog oocytes to unveil the structure and supramolecular organization of human transport proteins.

Authors:  Marc J Bergeron; Rajendra Boggavarapu; Marcel Meury; Zöhre Ucurum; Luc Caron; Paul Isenring; Matthias A Hediger; Dimitrios Fotiadis
Journal:  PLoS One       Date:  2011-07-07       Impact factor: 3.240

7.  Recognition of anesthetic barbiturates by a protein binding site: a high resolution structural analysis.

Authors:  Simon Oakley; L Sangeetha Vedula; Weiming Bu; Qing Cheng Meng; Jin Xi; Renyu Liu; Roderic G Eckenhoff; Patrick J Loll
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

8.  Computational approaches to selecting and optimising targets for structural biology.

Authors:  Ian M Overton; Geoffrey J Barton
Journal:  Methods       Date:  2011-08-27       Impact factor: 3.608

9.  The Protein Structure Initiative: achievements and visions for the future.

Authors:  Gaetano T Montelione
Journal:  F1000 Biol Rep       Date:  2012-04-02

Review 10.  Revealing the Mechanisms of Protein Disorder and N-Glycosylation in CD44-Hyaluronan Binding Using Molecular Simulation.

Authors:  Olgun Guvench
Journal:  Front Immunol       Date:  2015-06-16       Impact factor: 7.561

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