Literature DB >> 25983389

Protein Crystallography from the Perspective of Technology Developments.

Xiao-Dong Su1, Heng Zhang1, Thomas C Terwilliger2, Anders Liljas3, Junyu Xiao1, Yuhui Dong4.   

Abstract

Early on, crystallography was a domain of mineralogy and mathematics and dealt mostly with symmetry properties and imaginary crystal lattices. This changed when Wilhelm Conrad Röntgen discovered X-rays in 1895, and in 1912 Max von Laue and his associates discovered X-ray irradiated salt crystals would produce diffraction patterns that could reveal the internal atomic periodicity of the crystals. In the same year the father-and-son team, Henry and Lawrence Bragg successfully solved the first crystal structure of sodium chloride and the era of modern crystallography began. Protein crystallography (PX) started some 20 years later with the pioneering work of British crystallographers. In the past 50-60 years, the achievements of modern crystallography and particularly those in protein crystallography have been due to breakthroughs in theoretical and technical advancements such as phasing and direct methods; to more powerful X-ray sources such as synchrotron radiation (SR); to more sensitive and efficient X-ray detectors; to ever faster computers and to improvements in software. The exponential development of protein crystallography has been accelerated by the invention and applications of recombinant DNA technology that can yield nearly any protein of interest in large amounts and with relative ease. Novel methods, informatics platforms, and technologies for automation and high-throughput have allowed the development of large-scale, high efficiency macromolecular crystallography efforts in the field of structural genomics (SG). Very recently, the X-ray free-electron laser (XFEL) sources and its applications in protein crystallography have shown great potential for revolutionizing the whole field again in the near future.

Entities:  

Keywords:  X-ray crystallography; X-ray free-electron laser (XFEL); computer programs and graphics; protein crystallization; recombinant DNA techniques; structural genomics (SG); synchrotron radiation (SR)

Year:  2015        PMID: 25983389      PMCID: PMC4430849          DOI: 10.1080/0889311X.2014.973868

Source DB:  PubMed          Journal:  Crystallogr Rev        ISSN: 0889-311X            Impact factor:   2.467


  136 in total

1.  Structure and specificity of antibody molecules.

Authors:  R J Poljak; L M Amzel; B L Chen; R P Phizackerley; F Saul
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1975-11-06       Impact factor: 6.237

2.  Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis.

Authors:  Chern-Sing Goh; Ning Lan; Shawn M Douglas; Baolin Wu; Nathaniel Echols; Andrew Smith; Duncan Milburn; Gaetano T Montelione; Hongyu Zhao; Mark Gerstein
Journal:  J Mol Biol       Date:  2004-02-06       Impact factor: 5.469

Review 3.  Protein expression systems for structural genomics and proteomics.

Authors:  Shigeyuki Yokoyama
Journal:  Curr Opin Chem Biol       Date:  2003-02       Impact factor: 8.822

4.  The molecular structure of a dimer composed of the variable portions of the Bence-Jones protein REI refined at 2.0-A resolution.

Authors:  O Epp; E E Lattman; M Schiffer; R Huber; W Palm
Journal:  Biochemistry       Date:  1975-11-04       Impact factor: 3.162

5.  OASIS and molecular-replacement model completion.

Authors:  Yao He; De-Qiang Yao; Yuan-Xin Gu; Zheng-Jiong Lin; Chao-De Zheng; Hai-Fu Fan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-06-15

Review 6.  Macromolecular modeling with rosetta.

Authors:  Rhiju Das; David Baker
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

7.  Construction of biologically functional bacterial plasmids in vitro.

Authors:  S N Cohen; A C Chang; H W Boyer; R B Helling
Journal:  Proc Natl Acad Sci U S A       Date:  1973-11       Impact factor: 11.205

Review 8.  Heterologous protein production using the Pichia pastoris expression system.

Authors:  Sue Macauley-Patrick; Mariana L Fazenda; Brian McNeil; Linda M Harvey
Journal:  Yeast       Date:  2005-03       Impact factor: 3.239

9.  The establishment of two cell lines from the insect Spodoptera frugiperda (Lepidoptera; Noctuidae).

Authors:  J L Vaughn; R H Goodwin; G J Tompkins; P McCawley
Journal:  In Vitro       Date:  1977-04

10.  Genome construction between bacterial species in vitro: replication and expression of Staphylococcus plasmid genes in Escherichia coli.

Authors:  A C Chang; S N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

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  13 in total

Review 1.  From structural biology to designing therapy for inborn errors of metabolism.

Authors:  Wyatt W Yue
Journal:  J Inherit Metab Dis       Date:  2016-05-30       Impact factor: 4.982

2.  Rapid cadmium SAD phasing at the standard wavelength (1 Å).

Authors:  Saravanan Panneerselvam; Esa Pekka Kumpula; Inari Kursula; Anja Burkhardt; Alke Meents
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-06-30       Impact factor: 7.652

Review 3.  Where is crystallography going?

Authors:  Jonathan M Grimes; David R Hall; Alun W Ashton; Gwyndaf Evans; Robin L Owen; Armin Wagner; Katherine E McAuley; Frank von Delft; Allen M Orville; Thomas Sorensen; Martin A Walsh; Helen M Ginn; David I Stuart
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-02-01       Impact factor: 7.652

Review 4.  Proteomics, Bioinformatics and Structure-Function Antigen Mining For Gonorrhea Vaccines.

Authors:  Benjamin I Baarda; Fabian G Martinez; Aleksandra E Sikora
Journal:  Front Immunol       Date:  2018-12-04       Impact factor: 7.561

Review 5.  New developments in crystallography: exploring its technology, methods and scope in the molecular biosciences.

Authors:  John R Helliwell
Journal:  Biosci Rep       Date:  2017-07-04       Impact factor: 3.840

6.  Development of R7BP inhibitors through cross-linking coupled mass spectrometry and integrated modeling.

Authors:  Poorni R Adikaram; Jian-Hua Zhang; Claire M Kittock; Mritunjay Pandey; Sergio A Hassan; Nicole G Lue; Guanghui Wang; Marjan Gucek; William F Simonds
Journal:  Commun Biol       Date:  2019-09-13

7.  A Systematic Analysis of the Structures of Heterologously Expressed Proteins and Those from Their Native Hosts in the RCSB PDB Archive.

Authors:  Ren-Bin Zhou; Hui-Meng Lu; Jie Liu; Jian-Yu Shi; Jing Zhu; Qin-Qin Lu; Da-Chuan Yin
Journal:  PLoS One       Date:  2016-08-12       Impact factor: 3.240

8.  Polysaccharide-Based Injection Matrix for Serial Crystallography.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2020-05-08       Impact factor: 5.923

Review 9.  Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics.

Authors:  Ashutosh Srivastava; Tetsuro Nagai; Arpita Srivastava; Osamu Miyashita; Florence Tama
Journal:  Int J Mol Sci       Date:  2018-10-30       Impact factor: 5.923

Review 10.  Sample Delivery Media for Serial Crystallography.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2019-03-04       Impact factor: 5.923

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