Literature DB >> 20737028

Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication.

Sean Moran1, Rex X-F Ren, Squire Rumney, Eric T Kool.   

Abstract

Entities:  

Year:  1997        PMID： 20737028      PMCID： PMC2925312          DOI： 10.1021/ja963718g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  24 in total

1.  Synthesis and properties of oligonucleotides containing 2'-deoxynebularine and 2'-deoxyxanthosine.

Authors:  R Eritja; D M Horowitz; P A Walker; J P Ziehler-Martin; M S Boosalis; M F Goodman; K Itakura; B E Kaplan
Journal:  Nucleic Acids Res       Date:  1986-10-24       Impact factor: 16.971

2.  Nearest neighbor influences on DNA polymerase insertion fidelity.

Authors:  L V Mendelman; M S Boosalis; J Petruska; M F Goodman
Journal:  J Biol Chem       Date:  1989-08-25       Impact factor: 5.157

3.  Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases.

Authors:  M Takeshita; C N Chang; F Johnson; S Will; A P Grollman
Journal:  J Biol Chem       Date:  1987-07-25       Impact factor: 5.157

4.  Fluorescence studies of nucleotides and polynucleotides. II. 7-Deazanebularin: coding ambiguity in transcription with base pairs containing fewer than two hydrogen bonds.

Authors:  D C Ward; E Reich
Journal:  J Biol Chem       Date:  1972-02-10       Impact factor: 5.157

Review 5.  Biochemical basis of DNA replication fidelity.

Authors:  M F Goodman; S Creighton; L B Bloom; J Petruska
Journal:  Crit Rev Biochem Mol Biol       Date:  1993       Impact factor: 8.250

6.  Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.

Authors:  Barbara A Schweitzer; Eric T Kool
Journal:  J Am Chem Soc       Date:  1995-02-22       Impact factor: 15.419

7.  Mutants affecting nucleotide recognition by T7 DNA polymerase.

Authors:  M J Donlin; K A Johnson
Journal:  Biochemistry       Date:  1994-12-13       Impact factor: 3.162

8.  Fidelity of replication of phage phi X174 DNA by DNA polymerase III holoenzyme: spontaneous mutation by misincorporation.

Authors:  A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

9.  Mechanisms of error discrimination by Escherichia coli DNA polymerase I.

Authors:  W S el-Deiry; A G So; K M Downey
Journal:  Biochemistry       Date:  1988-01-26       Impact factor: 3.162

10.  Insertion of nucleotides opposite apurinic/apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides.

Authors:  D Sagher; B Strauss
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162
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  70 in total

1.  NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control.

Authors:  D A Klewer; A Hoskins; P Zhang; V J Davisson; D E Bergstrom; A C LiWang
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

2.  Recognition of GT mismatches by Vsr mismatch endonuclease.

Authors:  K R Fox; S L Allinson; H Sahagun-Krause; T Brown
Journal:  Nucleic Acids Res       Date:  2000-07-01       Impact factor: 16.971

3.  High-fidelity in vivo replication of DNA base shape mimics without Watson-Crick hydrogen bonds.

Authors:  James C Delaney; Paul T Henderson; Sandra A Helquist; Juan C Morales; John M Essigmann; Eric T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

4.  Reversible bond formation enables the replication and amplification of a crosslinking salen complex as an orthogonal base pair.

Authors:  Corinna Kaul; Markus Müller; Mirko Wagner; Sabine Schneider; Thomas Carell
Journal:  Nat Chem       Date:  2011-08-28       Impact factor: 24.427

5.  Minor Groove Interactions between Polymerase and DNA: More Essential to Replication than Watson-Crick Hydrogen Bonds?

Authors:  Juan C Morales; Eric T Kool
Journal:  J Am Chem Soc       Date:  1999-02-14       Impact factor: 15.419

6.  Highly Precise Shape Mimicry by a Difluorotoluene Deoxynucleoside, a Replication-Competent Substitute for Thymidine.

Authors:  Kevin M Guckian; Eric T Kool
Journal:  Angew Chem Int Ed Engl       Date:  1997-01-07       Impact factor: 15.336

7.  Measurement and theory of hydrogen bonding contribution to isosteric DNA base pairs.

Authors:  Omid Khakshoor; Steven E Wheeler; K N Houk; Eric T Kool
Journal:  J Am Chem Soc       Date:  2012-02-02       Impact factor: 15.419

8.  Structural basis for differential insertion kinetics of dNMPs opposite a difluorotoluene nucleotide residue.

Authors:  Shuangluo Xia; Soo Hyun Eom; William H Konigsberg; Jimin Wang
Journal:  Biochemistry       Date:  2012-02-08       Impact factor: 3.162

9.  Influence of a fluorobenzene nucleobase analogue on the conformational flexibility of RNA studied by molecular dynamics simulations.

Authors:  Martin Zacharias; Joachim W Engels
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

10.  Hydrolysis of RNA/DNA hybrids containing nonpolar pyrimidine isosteres defines regions essential for HIV type 1 polypurine tract selection.

Authors:  Jason W Rausch; Jin Qu; Hye Young Yi-Brunozzi; Eric T Kool; Stuart F J Le Grice
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-12       Impact factor: 11.205
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