Literature DB >> 20852718

Minor Groove Interactions between Polymerase and DNA: More Essential to Replication than Watson-Crick Hydrogen Bonds?

Juan C Morales1, Eric T Kool.   

Abstract

Entities:  

Year:  1999        PMID： 20852718      PMCID： PMC2939743          DOI： 10.1021/ja983502+

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  29 in total

1.  Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication.

Authors:  Sean Moran; Rex X-F Ren; Squire Rumney; Eric T Kool
Journal:  J Am Chem Soc       Date:  1997-02-26       Impact factor: 15.419

2.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

3.  C-Nucleosides Derived from Simple Aromatic Hydrocarbons.

Authors:  Narayan C Chaudhuri; Rex X-F Ren; Eric T Kool
Journal:  Synlett       Date:  1997-04-01       Impact factor: 2.454

4.  Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.

Authors:  S Doublié; S Tabor; A M Long; C C Richardson; T Ellenberger
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

Review 5.  Biochemical basis of DNA replication fidelity.

Authors:  M F Goodman; S Creighton; L B Bloom; J Petruska
Journal:  Crit Rev Biochem Mol Biol       Date:  1993       Impact factor: 8.250

6.  Enthalpy-entropy compensation in DNA melting thermodynamics.

Authors:  J Petruska; M F Goodman
Journal:  J Biol Chem       Date:  1995-01-13       Impact factor: 5.157

7.  A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity.

Authors:  S Moran; R X Ren; E T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

8.  Side chains involved in catalysis of the polymerase reaction of DNA polymerase I from Escherichia coli.

Authors:  A H Polesky; M E Dahlberg; S J Benkovic; N D Grindley; C M Joyce
Journal:  J Biol Chem       Date:  1992-04-25       Impact factor: 5.157

9.  Structure and Base Pairing Properties of a Replicable Nonpolar Isostere for Deoxyadenosine.

Authors:  Kevin M Guckian; Juan C Morales; Eric T Kool
Journal:  J Org Chem       Date:  1998       Impact factor: 4.354

10.  Non-hydrogen bonding 'terminator' nucleosides increase the 3'-end homogeneity of enzymatic RNA and DNA synthesis.

Authors:  S Moran; R X Ren; C J Sheils; S Rumney; E T Kool
Journal:  Nucleic Acids Res       Date:  1996-06-01       Impact factor: 16.971
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  51 in total

1.  NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control.

Authors:  D A Klewer; A Hoskins; P Zhang; V J Davisson; D E Bergstrom; A C LiWang
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

2.  High-fidelity in vivo replication of DNA base shape mimics without Watson-Crick hydrogen bonds.

Authors:  James C Delaney; Paul T Henderson; Sandra A Helquist; Juan C Morales; John M Essigmann; Eric T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

3.  Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites.

Authors:  Serge Smirnov; Tracy J Matray; Eric T Kool; Carlos de los Santos
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

4.  Yeast DNA polymerase eta makes functional contacts with the DNA minor groove only at the incoming nucleoside triphosphate.

Authors:  M Todd Washington; William T Wolfle; Thomas E Spratt; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-11       Impact factor: 11.205

5.  DNA ligases ensure fidelity by interrogating minor groove contacts.

Authors:  Pingfang Liu; Artur Burdzy; Lawrence C Sowers
Journal:  Nucleic Acids Res       Date:  2004-08-24       Impact factor: 16.971

6.  Probing minor groove recognition contacts by DNA polymerases and reverse transcriptases using 3-deaza-2'-deoxyadenosine.

Authors:  Cynthia L Hendrickson; Kevin G Devine; Steven A Benner
Journal:  Nucleic Acids Res       Date:  2004-04-23       Impact factor: 16.971

7.  Importance of steric effects on the efficiency and fidelity of transcription by T7 RNA polymerase.

Authors:  Sébastien Ulrich; Eric T Kool
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

8.  Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa.

Authors:  William T Wolfle; M Todd Washington; Eric T Kool; Thomas E Spratt; Sandra A Helquist; Louise Prakash; Satya Prakash
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

9.  DNA polymerase catalysis in the absence of Watson-Crick hydrogen bonds: analysis by single-turnover kinetics.

Authors:  Olga Potapova; Chikio Chan; Angela M DeLucia; Sandra A Helquist; Eric T Kool; Nigel D F Grindley; Catherine M Joyce
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

10.  An efficiently extended class of unnatural base pairs.

Authors:  Aaron M Leconte; Shigeo Matsuda; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2006-05-31       Impact factor: 15.419
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