Literature DB >> 20721539

Development of an enzymatic fiber-optic biosensor for detection of halogenated hydrocarbons.

Sarka Bidmanova1, Radka Chaloupkova, Jiri Damborsky, Zbynek Prokop.   

Abstract

An enzyme-based biosensor was developed by co-immobilization of purified enzyme haloalkane dehalogenase (EC 3.8.1.5) and a fluorescence pH indicator on the tip of an optical fiber. Haloalkane dehalogenase catalyzes hydrolytic dehalogenation of halogenated aliphatic hydrocarbons, which is accompanied by a pH change influencing the fluorescence of the indicator. The pH sensitivity of several fluorescent dyes was evaluated. The selected indicator 5(6)-carboxyfluorescein was conjugated with bovine serum albumin and its reaction was tested under different immobilization conditions. The biosensor was prepared by cross-linking of the conjugate in tandem with haloalkane dehalogenase using glutaraldehyde vapor. The biosensor, stored for 24 h in 50 mM phosphate buffer (pH 7.5) prior to measurement, was used after 15 min of equilibration, the halogenated compound was added, and the response was monitored for 30 min. Calibration of the biosensor with 1,2-dibromoethane and 3-chloro-2-(chloromethyl)-1-propene showed an excellent linear dependence, with detection limits of 0.133 and 0.014 mM, respectively. This biosensor provides a new tool for continuous in situ monitoring of halogenated environmental pollutants.

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Year:  2010        PMID: 20721539     DOI: 10.1007/s00216-010-4083-z

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  12 in total

1.  Structure and activity of DmmA, a marine haloalkane dehalogenase.

Authors:  Jennifer J Gehret; Liangcai Gu; Todd W Geders; William Clay Brown; Lena Gerwick; William H Gerwick; David H Sherman; Janet L Smith
Journal:  Protein Sci       Date:  2012-01-04       Impact factor: 6.725

2.  Biochemical characterization of a novel haloalkane dehalogenase from a cold-adapted bacterium.

Authors:  Ivana Drienovska; Eva Chovancova; Tana Koudelakova; Jiri Damborsky; Radka Chaloupkova
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

3.  Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17.

Authors:  Katsiaryna Tratsiak; Oksana Degtjarik; Ivana Drienovska; Lukas Chrast; Pavlina Rezacova; Michal Kuty; Radka Chaloupkova; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-05-25

Review 4.  Psychrophilic enzymes: structural adaptation, pharmaceutical and industrial applications.

Authors:  Sepideh Parvizpour; Nurulfarhana Hussin; Mohd Shahir Shamsir; Jafar Razmara
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-11       Impact factor: 4.813

5.  In silico design of potentially functional artificial metallo-haloalkane dehalogenase containing catalytic zinc.

Authors:  Abu Bakar Salleh; Yahaya M Normi; Thiau-Fu Ang; Thean Chor Leow
Journal:  3 Biotech       Date:  2018-07-12       Impact factor: 2.406

6.  Crystallization and preliminary X-ray diffraction analysis of the wild-type haloalkane dehalogenase DhaA and its variant DhaA13 complexed with different ligands.

Authors:  Alena Stsiapanava; Radka Chaloupkova; Andrea Fortova; Jiri Brynda; Manfred S Weiss; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-01-22

7.  Differences in crystallization of two LinB variants from Sphingobium japonicum UT26.

Authors:  Oksana Degtjarik; Radka Chaloupkova; Pavlina Rezacova; Michal Kuty; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-22

Review 8.  Dehalogenases: From Improved Performance to Potential Microbial Dehalogenation Applications.

Authors:  Thiau-Fu Ang; Jonathan Maiangwa; Abu Bakar Salleh; Yahaya M Normi; Thean Chor Leow
Journal:  Molecules       Date:  2018-05-07       Impact factor: 4.411

9.  A sensitive method for rapid detection of alkyl halides and dehalogenase activity using a multistep enzyme assay.

Authors:  Sebastian Fabritz; Franziska Maaß; Olga Avrutina; Tim Heiseler; Björn Steinmann; Harald Kolmar
Journal:  AMB Express       Date:  2012-09-24       Impact factor: 3.298

10.  Biochemical characterization of a haloalkane dehalogenase DadB from Alcanivorax dieselolei B-5.

Authors:  Anzhang Li; Zongze Shao
Journal:  PLoS One       Date:  2014-02-28       Impact factor: 3.240

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