Literature DB >> 18505165

A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism.

P M Ponomarenko1, L K Savinkova, I A Drachkova, M V Lysova, T V Arshinova, M P Ponomarenko, N A Kolchanov.   

Abstract

Entities:  

Mesh：

Substances：

Year:  2008        PMID： 18505165     DOI： 10.1134/s1607672908020117

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.834


× No keyword cloud information.
  14 in total

1.  Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.

Authors:  M P Ponomarenko; J V Ponomarenko; A S Frolov; N L Podkolodny; L K Savinkova; N A Kolchanov; G C Overton
Journal:  Bioinformatics       Date:  1999 Jul-Aug       Impact factor: 6.937

2.  [Computer modeling of TATA-box sequences of eukaryotic promoters].

Authors:  M P Ponomarenko; L K Savinkova; A E Kel'; N A Kolchanov
Journal:  Dokl Akad Nauk       Date:  1997-08

3.  Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences.

Authors:  P Bucher
Journal:  J Mol Biol       Date:  1990-04-20       Impact factor: 5.469

4.  Activation of the gamma E-crystallin pseudogene in the human hereditary Coppock-like cataract.

Authors:  R H Brakenhoff; H A Henskens; M W van Rossum; N H Lubsen; J G Schoenmakers
Journal:  Hum Mol Genet       Date:  1994-02       Impact factor: 6.150

5.  Tobacco carcinogen-detoxifying enzyme UGT1A7 and its association with orolaryngeal cancer risk.

Authors:  Z Zheng; J Y Park; C Guillemette; S P Schantz; P Lazarus
Journal:  J Natl Cancer Inst       Date:  2001-09-19       Impact factor: 13.506

6.  Polymorphisms in the transferrin 5' flanking region associated with differences in total iron binding capacity: possible implications in iron homeostasis.

Authors:  P L Lee; C Halloran; E Beutler
Journal:  Blood Cells Mol Dis       Date:  2001 Mar-Apr       Impact factor: 3.039

7.  UGT1A1 polymorphisms are important determinants of dietary carcinogen detoxification in the liver.

Authors:  Hugo Girard; Jean Thibaudeau; Michael H Court; Louis-Charles Fortier; Lyne Villeneuve; Patrick Caron; Qin Hao; Lisa L von Moltke; David J Greenblatt; Chantal Guillemette
Journal:  Hepatology       Date:  2005-08       Impact factor: 17.425

8.  A point mutation in the putative TATA box, detected in nondiseased individuals and patients with hereditary breast cancer, decreases promoter activity of the 17 beta-hydroxysteroid dehydrogenase type 1 gene 2 (EDH17B2) in vitro.

Authors:  H Peltoketo; Y Piao; A Mannermaa; B A Ponder; V Isomaa; M Poutanen; R Winqvist; R Vihko
Journal:  Genomics       Date:  1994-09-01       Impact factor: 5.736

9.  Polymorphisms of the interleukin-1 beta gene are associated with increased risk of non-small cell lung cancer.

Authors:  Shanbeh Zienolddiny; David Ryberg; Valentina Maggini; Vidar Skaug; Federico Canzian; Aage Haugen
Journal:  Int J Cancer       Date:  2004-04-10       Impact factor: 7.396

10.  Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA.

Authors:  R A Coleman; B F Pugh
Journal:  J Biol Chem       Date:  1995-06-09       Impact factor: 5.157
View more
  14 in total

1.  Specific/nonspecific binding of TBP to promoter DNA of the auxin response factor genes in plants correlated with ARFs function on gene transcription (activator/repressor).

Authors:  V V Mironova; N A Omelyanchuk; P M Ponomarenko; M P Ponomarenko; N A Kolchanov
Journal:  Dokl Biochem Biophys       Date:  2010-08-17       Impact factor: 0.788

2.  Candidate SNP markers of aggressiveness-related complications and comorbidities of genetic diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters.

Authors:  Irina V Chadaeva; Mikhail P Ponomarenko; Dmitry A Rasskazov; Ekaterina B Sharypova; Elena V Kashina; Marina Yu Matveeva; Tatjana V Arshinova; Petr M Ponomarenko; Olga V Arkova; Natalia P Bondar; Ludmila K Savinkova; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2016-12-28       Impact factor: 3.969

3.  An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding protein.

Authors:  Ludmila Savinkova; Irina Drachkova; Tatyana Arshinova; Petr Ponomarenko; Mikhail Ponomarenko; Nikolay Kolchanov
Journal:  PLoS One       Date:  2013-02-12       Impact factor: 3.240

4.  How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter.

Authors:  Mikhail Ponomarenko; Dmitry Rasskazov; Olga Arkova; Petr Ponomarenko; Valentin Suslov; Ludmila Savinkova; Nikolay Kolchanov
Journal:  Biomed Res Int       Date:  2015-10-04       Impact factor: 3.411

5.  Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters.

Authors:  Olga V Arkova; Mikhail P Ponomarenko; Dmitry A Rasskazov; Irina A Drachkova; Tatjana V Arshinova; Petr M Ponomarenko; Ludmila K Savinkova; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2015-12-16       Impact factor: 3.969

6.  Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.

Authors:  Petr Ponomarenko; Dmitry Rasskazov; Valentin Suslov; Ekaterina Sharypova; Ludmila Savinkova; Olga Podkolodnaya; Nikolay L Podkolodny; Natalya N Tverdokhleb; Irina Chadaeva; Mikhail Ponomarenko; Nikolay Kolchanov
Journal:  Biomed Res Int       Date:  2016-08-22       Impact factor: 3.411

7.  Candidate SNP Markers of Familial and Sporadic Alzheimer's Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.

Authors:  Petr Ponomarenko; Irina Chadaeva; Dmitry A Rasskazov; Ekaterina Sharypova; Elena V Kashina; Irina Drachkova; Dmitry Zhechev; Mikhail P Ponomarenko; Ludmila K Savinkova; Nikolay Kolchanov
Journal:  Front Aging Neurosci       Date:  2017-07-20       Impact factor: 5.750

8.  Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters.

Authors:  Irina V Chadaeva; Petr M Ponomarenko; Dmitry A Rasskazov; Ekaterina B Sharypova; Elena V Kashina; Dmitry A Zhechev; Irina A Drachkova; Olga V Arkova; Ludmila K Savinkova; Mikhail P Ponomarenko; Nikolay A Kolchanov; Ludmila V Osadchuk; Alexandr V Osadchuk
Journal:  BMC Genomics       Date:  2018-02-09       Impact factor: 3.969

9.  Candidate SNP Markers of Atherogenesis Significantly Shifting the Affinity of TATA-Binding Protein for Human Gene Promoters show stabilizing Natural Selection as a Sum of Neutral Drift Accelerating Atherogenesis and Directional Natural Selection Slowing It.

Authors:  Mikhail Ponomarenko; Dmitry Rasskazov; Irina Chadaeva; Ekaterina Sharypova; Irina Drachkova; Dmitry Oshchepkov; Petr Ponomarenko; Ludmila Savinkova; Evgeniya Oshchepkova; Maria Nazarenko; Nikolay Kolchanov
Journal:  Int J Mol Sci       Date:  2020-02-05       Impact factor: 5.923

10.  Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.

Authors:  Mikhail P Ponomarenko; Olga Arkova; Dmitry Rasskazov; Petr Ponomarenko; Ludmila Savinkova; Nikolay Kolchanov
Journal:  Front Immunol       Date:  2016-04-04       Impact factor: 7.561
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.