Literature DB >> 20713743

The distinction between recoding and codon reassignment.

John F Atkins, Pavel V Baranov.   

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Year:  2010        PMID： 20713743      PMCID： PMC2921827          DOI： 10.1534/genetics.110.119016

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


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  11 in total

Review 1.  Rewiring the keyboard: evolvability of the genetic code.

Authors:  R D Knight; S J Freeland; L F Landweber
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

Review 2.  Recoding: translational bifurcations in gene expression.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  Gene       Date:  2002-03-20       Impact factor: 3.688

3.  Dual targeting of a single tRNA(Trp) requires two different tryptophanyl-tRNA synthetases in Trypanosoma brucei.

Authors:  Fabien Charrière; Sunna Helgadóttir; Elke K Horn; Dieter Söll; André Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-24       Impact factor: 11.205

4.  Recoding: reprogrammed genetic decoding.

Authors:  R F Gesteland; R B Weiss; J F Atkins
Journal:  Science       Date:  1992-09-18       Impact factor: 47.728

Review 5.  Recoding: dynamic reprogramming of translation.

Authors:  R F Gesteland; J F Atkins
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

6.  In vivo contextual requirements for UAG translation as pyrrolysine.

Authors:  David Gordon Longstaff; Sherry Kathleen Blight; Liwen Zhang; Kari B Green-Church; Joseph Adrian Krzycki
Journal:  Mol Microbiol       Date:  2006-11-27       Impact factor: 3.501

Review 7.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 8.  Reprogrammed genetic decoding in cellular gene expression.

Authors:  Olivier Namy; Jean-Pierre Rousset; Sawsan Napthine; Ian Brierley
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

9.  Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont.

Authors:  John P McCutcheon; Bradon R McDonald; Nancy A Moran
Journal:  PLoS Genet       Date:  2009-07-17       Impact factor: 5.917

10.  Recode-2: new design, new search tools, and many more genes.

Authors:  Michaël Bekaert; Andrew E Firth; Yan Zhang; Vadim N Gladyshev; John F Atkins; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2009-09-25       Impact factor: 16.971
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  13 in total

Review 1.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

2.  A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment.

Authors:  Virag Sharma; Andrew E Firth; Ivan Antonov; Olivier Fayet; John F Atkins; Mark Borodovsky; Pavel V Baranov
Journal:  Mol Biol Evol       Date:  2011-06-14       Impact factor: 16.240

Review 3.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 4.  Rewriting the Genetic Code.

Authors:  Takahito Mukai; Marc J Lajoie; Markus Englert; Dieter Söll
Journal:  Annu Rev Microbiol       Date:  2017-07-11       Impact factor: 15.500

Review 5.  Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology.

Authors:  Jiqiang Ling; Patrick O'Donoghue; Dieter Söll
Journal:  Nat Rev Microbiol       Date:  2015-09-22       Impact factor: 60.633

6.  Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element.

Authors:  Andrew E Firth; Norma M Wills; Raymond F Gesteland; John F Atkins
Journal:  Nucleic Acids Res       Date:  2011-04-27       Impact factor: 16.971

Review 7.  Programmed Deviations of Ribosomes From Standard Decoding in Archaea.

Authors:  Federica De Lise; Andrea Strazzulli; Roberta Iacono; Nicola Curci; Mauro Di Fenza; Luisa Maurelli; Marco Moracci; Beatrice Cobucci-Ponzano
Journal:  Front Microbiol       Date:  2021-06-04       Impact factor: 5.640

8.  Evidence of efficient stop codon readthrough in four mammalian genes.

Authors:  Gary Loughran; Ming-Yuan Chou; Ivaylo P Ivanov; Irwin Jungreis; Manolis Kellis; Anmol M Kiran; Pavel V Baranov; John F Atkins
Journal:  Nucleic Acids Res       Date:  2014-07-10       Impact factor: 16.971

9.  Comparative genomics reveals new evolutionary and ecological patterns of selenium utilization in bacteria.

Authors:  Ting Peng; Jie Lin; Yin-Zhen Xu; Yan Zhang
Journal:  ISME J       Date:  2016-01-22       Impact factor: 10.302

Review 10.  An integrated, structure- and energy-based view of the genetic code.

Authors:  Henri Grosjean; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2016-07-22       Impact factor: 16.971
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