Literature DB >> 20713692

Yin and Yang of histone H2B roles in silencing and longevity: a tale of two arginines.

Junbiao Dai1, Edel M Hyland, Anne Norris, Jef D Boeke.   

Abstract

In budding yeast, silent chromatin is defined at the region of telomeres, rDNA loci, and silent mating loci. Although the silent chromatin at different loci shows structural similarity, the underlying mechanism to establish, maintain, and inherit these structures may be fundamentally different. In this study, we found two arginine residues within histone H2B, which are specifically required to maintain either the telomeric or the rDNA silenct chromatin. Arginine 95 (R95) plays a specific role at telomeres, whereas arginine 102 (R102) is required to maintain the silent chromatin at rDNA and to ensure the integrity of rDNA loci by suppressing recombination between rDNA repeats. R95 mutants show enhanced rDNA silencing but a paradoxically low Sir2 protein abundance. Furthermore weakened silencing at telomeres in R95 mutants can be suppressed by a specific SIR3 allele, SIR3-D205N, which increases the affinity of Sir proteins to telomeres, suggesting H2B-R95 may directly mediate telomeric Sir protein-nucleosome interactions. Double mutations of R95 and R102 lead to desilencing of both rDNA and telomeres, indicating both arginines are necessary to ensure integrity of silent chromatin at these loci. Furthermore, mutations of R102 cause accumulation of extrachromosomal rDNA circles and reduce life span, suggesting that histone H2B contributes to longevity.

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Year:  2010        PMID: 20713692      PMCID: PMC2975301          DOI: 10.1534/genetics.110.118489

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  43 in total

1.  Identification of novel histone post-translational modifications by peptide mass fingerprinting.

Authors:  Liwen Zhang; Ericka E Eugeni; Mark R Parthun; Michael A Freitas
Journal:  Chromosoma       Date:  2003-07-09       Impact factor: 4.316

2.  A core nucleosome surface crucial for transcriptional silencing.

Authors:  Jeong-Hyun Park; Michael S Cosgrove; Elaine Youngman; Cynthia Wolberger; Jef D Boeke
Journal:  Nat Genet       Date:  2002-09-16       Impact factor: 38.330

3.  Abundance of ribosomal RNA gene copies maintains genome integrity.

Authors:  Satoru Ide; Takaaki Miyazaki; Hisaji Maki; Takehiko Kobayashi
Journal:  Science       Date:  2010-02-05       Impact factor: 47.728

Review 4.  The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae.

Authors:  Laura N Rusche; Ann L Kirchmaier; Jasper Rine
Journal:  Annu Rev Biochem       Date:  2003-03-27       Impact factor: 23.643

5.  Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions.

Authors:  C L White; R K Suto; K Luger
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

Review 6.  Silent information regulator 3: the Goldilocks of the silencing complex.

Authors:  Anne Norris; Jef D Boeke
Journal:  Genes Dev       Date:  2010-01-15       Impact factor: 11.361

7.  HistoneHits: a database for histone mutations and their phenotypes.

Authors:  Hailiang Huang; Alexandra M Maertens; Edel M Hyland; Junbiao Dai; Anne Norris; Jef D Boeke; Joel S Bader
Journal:  Genome Res       Date:  2009-02-13       Impact factor: 9.043

8.  Differential DNA affinity specifies roles for the origin recognition complex in budding yeast heterochromatin.

Authors:  Madeleine A Palacios DeBeer; Ulrika Muller; Catherine A Fox
Journal:  Genes Dev       Date:  2003-08-01       Impact factor: 11.361

9.  Association of the RENT complex with nontranscribed and coding regions of rDNA and a regional requirement for the replication fork block protein Fob1 in rDNA silencing.

Authors:  Julie Huang; Danesh Moazed
Journal:  Genes Dev       Date:  2003-08-15       Impact factor: 11.361

10.  Caloric restriction and life span determination of yeast cells.

Authors:  Oliver Medvedik; David A Sinclair
Journal:  Methods Mol Biol       Date:  2007
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  10 in total

1.  Construction of Comprehensive Dosage-Matching Core Histone Mutant Libraries for Saccharomyces cerevisiae.

Authors:  Shuangying Jiang; Yan Liu; Ann Wang; Yiran Qin; Maoguo Luo; Qingyu Wu; Jef D Boeke; Junbiao Dai
Journal:  Genetics       Date:  2017-10-30       Impact factor: 4.562

2.  Histone Sprocket Arginine Residues Are Important for Gene Expression, DNA Repair, and Cell Viability in Saccharomyces cerevisiae.

Authors:  Amelia J Hodges; Isaura J Gallegos; Marian F Laughery; Rithy Meas; Linh Tran; John J Wyrick
Journal:  Genetics       Date:  2015-05-12       Impact factor: 4.562

3.  A region of the nucleosome required for multiple types of transcriptional silencing in Saccharomyces cerevisiae.

Authors:  Eugenia T Prescott; Alexias Safi; Laura N Rusche
Journal:  Genetics       Date:  2011-05-05       Impact factor: 4.562

4.  Ascending the nucleosome face: recognition and function of structured domains in the histone H2A-H2B dimer.

Authors:  John J Wyrick; McKenna N M Kyriss; William B Davis
Journal:  Biochim Biophys Acta       Date:  2012-04-12

5.  Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution.

Authors:  Karim-Jean Armache; Joseph D Garlick; Daniele Canzio; Geeta J Narlikar; Robert E Kingston
Journal:  Science       Date:  2011-11-18       Impact factor: 47.728

6.  The histone H2B Arg95 residue links the pheromone response pathway to rapamycin-induced G1 arrest in yeast.

Authors:  Abdallah Alhaj Sulaiman; Reem Ali; Mustapha Aouida; Balasubramanian Moovarkumudalvan; Dindial Ramotar
Journal:  Sci Rep       Date:  2022-06-15       Impact factor: 4.996

7.  Canonical histone H2Ba and H2A.X dimerize in an opposite genomic localization to H2A.Z/H2B.Z dimers in Toxoplasma gondii.

Authors:  Silvina S Bogado; María C Dalmasso; Agustina Ganuza; Kami Kim; William J Sullivan; Sergio O Angel; Laura Vanagas
Journal:  Mol Biochem Parasitol       Date:  2014-10-05       Impact factor: 1.759

8.  Identification of lysine 37 of histone H2B as a novel site of methylation.

Authors:  Kathryn E Gardner; Li Zhou; Michael A Parra; Xian Chen; Brian D Strahl
Journal:  PLoS One       Date:  2011-01-13       Impact factor: 3.240

9.  Dissecting Nucleosome Function with a Comprehensive Histone H2A and H2B Mutant Library.

Authors:  Shuangying Jiang; Yan Liu; Caiyue Xu; Yun Wang; Jianhui Gong; Yue Shen; Qingyu Wu; Jef D Boeke; Junbiao Dai
Journal:  G3 (Bethesda)       Date:  2017-12-04       Impact factor: 3.154

10.  Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark.

Authors:  Marion Crespo; Lacey J Luense; Marie Arlotto; Jialei Hu; Jean Dorsey; Encar García-Oliver; Parisha P Shah; Delphine Pflieger; Shelley L Berger; Jérôme Govin
Journal:  Epigenetics Chromatin       Date:  2020-09-15       Impact factor: 4.954

  10 in total

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