Literature DB >> 22521324

Ascending the nucleosome face: recognition and function of structured domains in the histone H2A-H2B dimer.

John J Wyrick1, McKenna N M Kyriss, William B Davis.   

Abstract

Research over the past decade has greatly expanded our understanding of the nucleosome's role as a dynamic hub that is specifically recognized by many regulatory proteins involved in transcription, silencing, replication, repair, and chromosome segregation. While many of these nucleosome interactions are mediated by post-translational modifications in the disordered histone tails, it is becoming increasingly apparent that structured regions of the nucleosome, including the histone fold domains, are also recognized by numerous regulatory proteins. This review will focus on the recognition of structured domains in the histone H2A-H2B dimer, including the acidic patch, the H2A docking domain, the H2B α3-αC helices, and the HAR/HBR domains, and will survey the known biological functions of histone residues within these domains. Novel post-translational modifications and trans-histone regulatory pathways involving structured regions of the H2A-H2B dimer will be highlighted, along with the role of intrinsic disorder in the recognition of structured nucleosome regions.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22521324      PMCID: PMC3461831          DOI: 10.1016/j.bbagrm.2012.04.001

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  103 in total

1.  Crystal structure of a nucleosome core particle containing the variant histone H2A.Z.

Authors:  R K Suto; M J Clarkson; D J Tremethick; K Luger
Journal:  Nat Struct Biol       Date:  2000-12

2.  Two classes of sir3 mutants enhance the sir1 mutant mating defect and abolish telomeric silencing in Saccharomyces cerevisiae.

Authors:  E M Stone; C Reifsnyder; M McVey; B Gazo; L Pillus
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

Review 3.  Recognition of methylated histones: new twists and variations.

Authors:  Sepideh Khorasanizadeh
Journal:  Curr Opin Struct Biol       Date:  2011-11-05       Impact factor: 6.809

4.  Rad6-dependent ubiquitination of histone H2B in yeast.

Authors:  K Robzyk; J Recht; M A Osley
Journal:  Science       Date:  2000-01-21       Impact factor: 47.728

Review 5.  Deciphering arginine methylation: Tudor tells the tale.

Authors:  Chen Chen; Timothy J Nott; Jing Jin; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2011-09-14       Impact factor: 94.444

6.  GlcNAcylation of histone H2B facilitates its monoubiquitination.

Authors:  Ryoji Fujiki; Waka Hashiba; Hiroki Sekine; Atsushi Yokoyama; Toshihiro Chikanishi; Saya Ito; Yuuki Imai; Jaehoon Kim; Housheng Hansen He; Katsuhide Igarashi; Jun Kanno; Fumiaki Ohtake; Hirochika Kitagawa; Robert G Roeder; Myles Brown; Shigeaki Kato
Journal:  Nature       Date:  2011-11-27       Impact factor: 49.962

7.  Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions.

Authors:  C L White; R K Suto; K Luger
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

8.  Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution.

Authors:  Karim-Jean Armache; Joseph D Garlick; Daniele Canzio; Geeta J Narlikar; Robert E Kingston
Journal:  Science       Date:  2011-11-18       Impact factor: 47.728

9.  Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.

Authors:  Curt A Davey; David F Sargent; Karolin Luger; Armin W Maeder; Timothy J Richmond
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

Review 10.  Recognition of non-methyl histone marks.

Authors:  Mark Bycroft
Journal:  Curr Opin Struct Biol       Date:  2011-10-24       Impact factor: 6.809

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  12 in total

1.  FACT and the H2B N tail.

Authors:  Mary Ann Osley
Journal:  Mol Cell Biol       Date:  2013-11-25       Impact factor: 4.272

2.  A highly conserved region within H2B is important for FACT to act on nucleosomes.

Authors:  Suting Zheng; J Brooks Crickard; Abhinaya Srikanth; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2013-11-18       Impact factor: 4.272

3.  Histone chaperone Anp32e removes H2A.Z from DNA double-strand breaks and promotes nucleosome reorganization and DNA repair.

Authors:  Ozge Gursoy-Yuzugullu; Marina K Ayrapetov; Brendan D Price
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-01       Impact factor: 11.205

4.  Replication fork stalling elicits chromatin compaction for the stability of stalling replication forks.

Authors:  Gang Feng; Yue Yuan; Zeyang Li; Lu Wang; Bo Zhang; Jiechen Luo; Jianguo Ji; Daochun Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

5.  A cassette of basic amino acids in histone H2B regulates nucleosome dynamics and access to DNA damage.

Authors:  Yesenia Rodriguez; Mingrui Duan; John J Wyrick; Michael J Smerdon
Journal:  J Biol Chem       Date:  2018-03-27       Impact factor: 5.157

6.  Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae.

Authors:  Amelia J Hodges; Lisa M Gloss; John J Wyrick
Journal:  Genetics       Date:  2017-05-03       Impact factor: 4.562

Review 7.  The variant histone H2A.V of Drosophila--three roles, two guises.

Authors:  Sandro Baldi; Peter B Becker
Journal:  Chromosoma       Date:  2013-04-04       Impact factor: 4.316

8.  Chromatin modification by PSC occurs at one PSC per nucleosome and does not require the acidic patch of histone H2A.

Authors:  Stanley M Lo; Kyle A McElroy; Nicole J Francis
Journal:  PLoS One       Date:  2012-10-11       Impact factor: 3.240

Review 9.  Histone H2A variants in nucleosomes and chromatin: more or less stable?

Authors:  Clemens Bönisch; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-09-21       Impact factor: 16.971

10.  The Nucleosome Acidic Patch Regulates the H2B K123 Monoubiquitylation Cascade and Transcription Elongation in Saccharomyces cerevisiae.

Authors:  Christine E Cucinotta; Alexandria N Young; Kristin M Klucevsek; Karen M Arndt
Journal:  PLoS Genet       Date:  2015-08-04       Impact factor: 5.917

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