Literature DB >> 20707378

Estimating the hydrogen bond energy.

Katharina Wendler1, Jens Thar, Stefan Zahn, Barbara Kirchner.   

Abstract

First, different approaches to detect hydrogen bonds and to evaluate their energies are introduced newly or are extended. Supermolecular interaction energies of 256 dimers, each containing one single hydrogen bond, were correlated to various descriptors by a fit function depending both on the donor and acceptor atoms of the hydrogen bond. On the one hand, descriptors were orbital-based parameters as the two-center or three-center shared electron number, products of ionization potentials and shared electron numbers, and the natural bond orbital interaction energy. On the other hand, integral descriptors examined were the acceptor-proton distance, the hydrogen bond angle, and the IR frequency shift of the donor-proton stretching vibration. Whereas an interaction energy dependence on 1/r(3.8) was established, no correlation was found for the angle. Second, the fit functions are applied to hydrogen bonds in polypeptides, amino acid dimers, and water cluster, thus their reliability is demonstrated. Employing the fit functions to assign intramolecular hydrogen bond energies in polypeptides, several side chain CH...O and CH...N hydrogen bonds were detected on the fly. Also, the fit functions describe rather well intermolecular hydrogen bonds in amino acid dimers and the cooperativity of hydrogen bond energies in water clusters.

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Year:  2010        PMID: 20707378     DOI: 10.1021/jp103470e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  28 in total

1.  A new theoretical analysis of the cooperative effect in T-shaped hydrogen complexes of CnHm∙∙∙HCN∙∙∙HW with n = 2, m = 2 or 4, and W = F or CN.

Authors:  Boaz G Oliveira; Tamires F Costa; Regiane C M U Araújo
Journal:  J Mol Model       Date:  2013-05-31       Impact factor: 1.810

2.  Analysis of the strength of interfacial hydrogen bonds between tubulin dimers using quantum theory of atoms in molecules.

Authors:  Ahmed T Ayoub; Travis J A Craddock; Mariusz Klobukowski; Jack Tuszynski
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

3.  Charting Hydrogen Bond Anisotropy.

Authors:  Diogo Santos-Martins; Stefano Forli
Journal:  J Chem Theory Comput       Date:  2020-03-10       Impact factor: 6.006

4.  A computational study of hydrogen bonds in intermolecular systems of high complexity: arachno-pentaborane(11)···Y with Y = O2 and N 2.

Authors:  Abedin Zabardasti; Hamid Goudarziafshar; Maryam Salehnassaj; Boaz G Oliveira
Journal:  J Mol Model       Date:  2014-08-15       Impact factor: 1.810

5.  Strength of hydrogen bonds of water depends on local environment.

Authors:  Matej Huš; Tomaz Urbic
Journal:  J Chem Phys       Date:  2012-04-14       Impact factor: 3.488

6.  Stabilizing factors of the molecular structure in silicon-based peptidomimetics in gas-phase and water solution. Assessment of the correlation between different descriptors of hydrogen bond strength.

Authors:  María Pilar Gema Rodríguez Ortega; Manuel Montejo; Juan Jesús López González
Journal:  J Mol Model       Date:  2013-07-31       Impact factor: 1.810

7.  Effects of Structure and Environment on the Spectroscopic Properties of (3-Amino-Substituted-Thieno[2,3-b] Pyridine-2-yl)Pyridine/Quinolin-2-yl)(Phenyl)Methanones: Experimental and Theoretical Study.

Authors:  Ibrahim Ahmed Z Al-Ansari
Journal:  J Fluoresc       Date:  2016-02-09       Impact factor: 2.217

8.  Insights towards sulfonamide drug specificity in α-carbonic anhydrases.

Authors:  Mayank Aggarwal; Bhargav Kondeti; Robert McKenna
Journal:  Bioorg Med Chem       Date:  2012-08-28       Impact factor: 3.641

9.  Outer-sphere contributions to the electronic structure of type zero copper proteins.

Authors:  Kyle M Lancaster; María-Eugenia Zaballa; Stephen Sproules; Mahesh Sundararajan; Serena DeBeer; John H Richards; Alejandro J Vila; Frank Neese; Harry B Gray
Journal:  J Am Chem Soc       Date:  2012-05-07       Impact factor: 15.419

Review 10.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

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