| Literature DB >> 20701742 |
Sylvia Schäffer1, Stephan Koblmüller, Tobias Pfingstl, Christian Sturmbauer, Günther Krisper.
Abstract
BACKGROUND: The use of molecular genetic data in phylogenetic systematics has revolutionized this field of research in that several taxonomic groupings defined by traditional taxonomic approaches have been rejected by molecular data. The taxonomic classification of the oribatid mite group Circumdehiscentiae ("Higher Oribatida") is largely based on morphological characters and several different classification schemes, all based upon the validity of diagnostic morphological characters, have been proposed by various authors. The aims of this study were to test the appropriateness of the current taxonomic classification schemes for the Circumdehiscentiae and to trace the evolution of the main diagnostic traits (the four nymphal traits scalps, centrodorsal setae, sclerits and wrinkled cuticle plus octotaxic system and pteromorphs both in adults) on the basis of a molecular phylogenetic hypothesis by means of parsimony, likelihood and Bayesian approaches.Entities:
Mesh:
Year: 2010 PMID: 20701742 PMCID: PMC2930640 DOI: 10.1186/1471-2148-10-246
Source DB: PubMed Journal: BMC Evol Biol ISSN: 1471-2148 Impact factor: 3.260
Figure 1The phylogenetic reconstruction of the Circumdehiscentiae based on 14 morphological characters modified after Wauthy[37]. § SEM micrographs modified from Hunt et al. [99].
Specimens, GenBank accession numbers and coding of morphological characters for the analyzed samples.
| Classification | Species | sca | cd | os | scl | gc | pt | |||
|---|---|---|---|---|---|---|---|---|---|---|
| 28S | hsp82 | |||||||||
| OUTGROUP | ||||||||||
| Hermanniidae | ||||||||||
| | 0 | 0 | 0 | 0 | 1 | 0 | ||||
| 0 | 0 | 0 | 0 | 1 | 0 | |||||
| OPSIOPHEREDERMATA | ||||||||||
| Hermanniellidae | ||||||||||
| | 1 | 0 | 0 | 0 | 0 | 0 | ||||
| EUPHEREDERMATA | ||||||||||
| Neoliodidae | ||||||||||
| | 2 | 2 | 0 | 0 | 0 | 0 | ||||
| 2 | 2 | 0 | 0 | 0 | 0 | |||||
| Gymnodamaeidae | ||||||||||
| | --- | 2 | 2 | 0 | 0 | 0 | 0 | |||
| Eutegaeidae | ||||||||||
| | 2 | 2 | 0 | 0 | 0 | 0 | ||||
| Zetorchestidae | ||||||||||
| | 2 | 2 | 0 | 0 | 0 | 0 | ||||
| Niphocepheidae | ||||||||||
| | 2 | 2 | 0 | 0 | 0 | 0 | ||||
| DORSODEFICIENT APHEREDERMATA | ||||||||||
| Liacaridae | ||||||||||
| | --- | 2 | 2 | 0 | 0 | 0 | 0 | |||
| Peloppiidae | ||||||||||
| | 2 | 2 | 0 | 0 | 0 | 0 | ||||
| NORMAL PYCNONOTIC APHEREDERMATA | ||||||||||
| Carabodidae | ||||||||||
| | 3 | 1 | 0 | 0 | 0 | 0 | ||||
| 3 | 1 | 0 | 0 | 0 | 0 | |||||
| 3 | 1 | 0 | 0 | 0 | 0 | |||||
| Hydrozetidae | ||||||||||
| | 3 | 1 | 0 | 0 | 0 | 0 | ||||
| 3 | 1 | 0 | 0 | 0 | 0 | |||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| 3 | 1 | 0 | 0 | 1 | 0 | |||||
| 3 | 1 | 0 | 0 | 1 | 0 | |||||
| 3 | 1 | 0 | 0 | 1 | 0 | |||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | ||||||||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| PORONOTA | ||||||||||
| Galumnidae | ||||||||||
| | 3 | 1 | 1 | 2 | 0 | 2 | ||||
| Ceratozetidae | ||||||||||
| | 3 | 1 | 1 | 2 | 0 | 1 | ||||
| Euzetidae | ||||||||||
| | 3 | 1 | 1 | 2 | 0 | 1 | ||||
| Oribatulidae | ||||||||||
| | 3 | 1 | 1 | 1 | 0 | 0 | ||||
| | ||||||||||
| | 3 | 1 | 3 | 0 | 1 | 0 | ||||
| 3 | 1 | 3 | 0 | 1 | 0 | |||||
| 3 | 1 | 3 | 0 | 1 | 0 | |||||
| 3 | 1 | 3 | 0 | 1 | 0 | |||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | 3 | 1 | 0 | 0 | 1 | 0 | ||||
| | 3 | 1 | 3 | 0 | 1 | 0 | ||||
| | ||||||||||
| | 3 | 1 | 1 | 0 | 1 | 2 | ||||
| | ||||||||||
| | 3 | 1 | 0 | 0 | 1 | 1 | ||||
| | ||||||||||
| | 3 | 1 | 1 | 0 | 1 | 1 | ||||
| | 3 | 1 | 2 | 0 | 1 | 1 | ||||
| 3 | 1 | 2 | 0 | 1 | 1 | |||||
Families written in bold lettering are assigned to the subdivision "Circumdehiscentiae with wrinkled nymphs" after [23]. a = Sequences obtained from GenBank.
Morphological characters and character coding used in this study: sca, scalps (0 = outgroup, 1 = opsiopheredermous, 2 = eupheredermous, 3 = apheredermous); cd, centrodorsal setae (0 = holotrich, 1 = integridorsal, 2 = dorsodeficient); os, octotaxic system (0 = no porose organs, 1 = porose areas, 2 = saccules type1, 3 = saccules type2); scl, sclerits (0 = nymphs nude, 1 = nymphs with microsclerits, 2 = nymphs with macrosclerits); gc, gastronotic cuticle of nymphs (0 = unwrinkled, 1 = wrinkled); pt, pteromorphs (0 = no pt, 1 = pt immotile, 2 = pt motile).
Figure 2Bayesian 50% majority rule consensus tree of 40 representatives of all five subdivisions of Circumdehiscentiae [35]: Opsiopheredermata (violet), Eupheredermata (green), dorsodeficient Apheredermata (orange), pycnonotic Apheredermata (blue) and Poronota (red). The tree is based on a combined data set of all available fragments of the 28S rDNA, ef-1α and hsp82 genes. Posterior probabilities >50 are shown. Numbers at nodes indicate nodes that have been used to assess ancestral states. *Sequence data of taxon obtained from GenBank.
Comparison of alternative phylogenetic hypotheses against the unconstrained Bayesian inference (BI) tree using Bayes factors.
| Trace | ln P (model/data) | Standard error | log10 Bayes Factors | Interpretation Bayes Factors |
|---|---|---|---|---|
| BI | -15019,465 | ± 0,123 | - | |
| hypothesis 1 | -15029,989 | ± 0,125 | -4,57 | Decisive |
| BI | -15019,465 | ± 0,125 | - | |
| hypothesis 2 | -15065,923 | ± 0,124 | -20,176 | Decisive |
| BI | -15019,465 | ± 0,12 | - | |
| hypothesis 3 | -15177,437 | ± 0,112 | -68,606 | Decisive |
| BI | -15019,465 | ± 0,121 | - | |
| hypothesis 4 | -15039,901 | ± 0,117 | -8,875 | Decisive |
| BI | -15019,465 | ± 0,117 | - | |
| hypothesis 5 | -15113,273 | ± 0,119 | -40,74 | Decisive |
| BI | -15019,465 | ± 0,12 | - | |
| hypothesis 6 | -15023,101 | ± 0,125 | -1,579 | Strong |
| BI | -15019,465 | ± 0,12 | - | |
| hypothesis 7 | -15091,084 | ± 0,112 | -31,104 | Decisive |
| BI | -15019,465 | ± 0,119 | - | |
| hypothesis 8 | -15073,085 | ± 0,121 | -23,287 | Decisive |
| BI | -15019,465 | ± 0,12 | - | |
| hypothesis 9 | -15127,044 | ± 0,114 | -46,721 | Decisive |
| BI | -15019,465 | ± 0,122 | - | |
| hypothesis 10 | -15197,565 | ± 0,113 | -77,348 | Decisive |
Figure 3Ancestral state reconstructions for the Circumdehiscentiae based on parsimony (left cladogram) and likelihood (right cladogram) of (A) scalps in nymphs, (B) centrodorsal setae in nymphs, (C) porose organs (two-stated character coding), and (D) the different types of porose organs found in oribatid mites. Light micrographs with differential interference contrast showing one porose area of Trichoribates trimaculatus, one saccule type1 of Achipteria coleoptrata and one saccule type2 of Scutovertex pannonicus (from left to right). Scale bars: 10 μm. *Sequence data of taxon obtained from GenBank.
Figure 4Ancestral state reconstructions for the Circumdehiscentiae based on parsimony (left cladogram) and likelihood (right cladogram) of (A) sclerits in nymphs, (B) wrinkles in nymphs, and (C) pteromorphs in adults. § SEM micrographs modified from Hunt et al. [99]. *Sequence data of taxon obtained from GenBank.
Mean of posterior probabilities (PPs) of the Bayesian reconstruction for the ancestral states of six studied characters at 23 nodes from Fig. 2.
| scalps | centrodorsal setae | porose organ - 1 | porose organ -2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| node | 0 | 1 | 2 | 3 | 0 | 1 | 2 | 0 | 1 | 0 | 1 | 2 | 3 |
| 0.129 | 0.161 | 0.551 | 0.159 | 0.193 | 1.192E-2 | 0.795 | 2.842E-2 | 0.823 | 4.625E-2 | 5.619E-2 | 7.422E-2 | ||
| 7.195E-2 | 6.589E-2 | 0.839 | 2.302E-2 | 4.564E-2 | 3.798E-3 | 4.053E-2 | 0.815 | 4.824E-2 | 5.965E-2 | 7.698E-2 | |||
| 8.732E-2 | 8.214E-2 | 0.283 | 0.548 | 7.921E-2 | 3.625E-2 | 0.885 | 2.298E-2 | 0.822 | 5.025E-2 | 5.614E-2 | 7.118E-2 | ||
| 0.114 | 0.102 | 0.619 | 0.165 | 5.281E-2 | 3.741E-3 | 5.189E-2 | 0.783 | 5.799E-2 | 6.899E-2 | 9.014E-2 | |||
| 0.138 | 0.125 | 0.338 | 0.399 | 8.779E-2 | 1.109E-2 | 9.299E-2 | 0.706 | 8.391E-2 | 9.421E-2 | 0.116 | |||
| 3.41E-2 | 3.582E-2 | 2.456E-2 | 1.762E-2 | 8.361E-3 | 2.752E-2 | 0.854 | 3.664E-2 | 4.744E-2 | 6.183E-2 | ||||
| 4.212E-2 | 4.355E-2 | 3.752E-2 | 0.877 | 0.186 | 0.573 | 0.241 | 6.441E-2 | 0.638 | 0.114 | 0.129 | 0.12 | ||
| 1.541E-2 | 1.75E-2 | 7.441E-3 | 6.358E-3 | 1.756E-3 | 7.518E-3 | 1.491E-2 | 2.171E-2 | 3.002E-2 | |||||
| 2.793E-2 | 2.776E-2 | 1.686E-2 | 1.411E-2 | 5.184E-3 | 1.764E-2 | 0.89 | 2.761E-2 | 3.477E-2 | 4.764E-2 | ||||
| 3.423E-2 | 3.736E-2 | 3.452E-2 | 0.894 | 0.173 | 0.648 | 0.178 | 0.861 | 0.139 | 0.525 | 0.163 | 0.179 | 0.134 | |
| 7.894E-3 | 8.032E-3 | 3.046E-3 | 3.285E-3 | 7.709E-4 | 2.789E-3 | 5.943E-3 | 8.732E-3 | 1.209E-2 | |||||
| 3.029E-2 | 3.006E-2 | 1.842E-2 | 1.524E-2 | 5.591E-3 | 1.927E-2 | 0.88 | 3.016E-2 | 3.778E-2 | 5.183E-2 | ||||
| 3.394E-3 | 3.491E-3 | 1.068E-3 | 1.259E-3 | 2.525E-4 | 9.317E-4 | 2.211E-3 | 3.451E-3 | 4.733E-3 | |||||
| 9.165E-3 | 9.32E-3 | 3.52E-3 | 3.799E-3 | 8.827E-4 | 3.238E-3 | 6.899E-3 | 1.013E-2 | 1.398E-2 | |||||
| 8.217E-3 | 8.786E-3 | 2.644E-3 | 2.728E-3 | 5.34E-4 | 2.432E-3 | 6.732E-3 | 1.016E-2 | 1.351E-2 | |||||
| 4.279E-2 | 4.315E-2 | 3.287E-2 | 0.881 | 2.16E-2 | 1.17E-2 | 4.278E-2 | 1.322E-2 | 0.811 | 0.115 | 6.12E-2 | |||
| 3.657E-2 | 3.75E-2 | 2.507E-2 | 1.539E-2 | 6.504E-3 | 0.705 | 0.295 | 0.447 | 6.018E-2 | 9.243E-2 | 0.4 | |||
| 1.779E-2 | 1.881E-2 | 9.119E-3 | 7.636E-3 | 2.581E-3 | 1.13E-3 | 5.012E-3 | 1.281E-2 | 2.444E-2 | |||||
| 4.386E-3 | 4.75E-3 | 1.285E-3 | 1.501E-3 | 2.755E-4 | 1.146E-3 | 3.938E-4 | 2.133E-3 | 4.276E-3 | |||||
| 5.455E-2 | 5.458E-2 | 4.692E-2 | 0.844 | 3.079E-2 | 1.817E-2 | 6.511E-2 | 0.716 | 6.596E-2 | 7.736E-2 | 0.141 | |||
| 1.577E-2 | 1.882E-2 | 8.806E-3 | 7.628E-3 | 2.482E-3 | 3.612E-2 | 0.751 | 2.409E-2 | 3.333E-2 | 0.191 | ||||
| 4.429E-3 | 5.474E-2 | 1.244E-3 | 1.487E-3 | 1.93E-4 | 0.887 | 0.113 | 0.639 | 1.725E-2 | 2.59E-2 | 0.318 | |||
| 1.679E-2 | 1.884E-2 | 9.5E-3 | 8.235E-3 | 2.654E-3 | 9.344E-3 | 1.609E-2 | 2.144E-2 | 2.975E-2 | |||||
| 3.084E-2 | 3.575E-2 | 0.702 | 0.298 | 1.501E-2 | 2.146E-2 | ||||||||
| 3.285E-2 | 3.984E-2 | 5.638E-2 | 2.034E-2 | 2.687E-2 | |||||||||
| 2.562E-2 | 3.196E-2 | 0.679 | 0.321 | 1.902E-2 | 2.702E-2 | ||||||||
| 3.707E-2 | 4.428E-2 | 7.101E-2 | 2.316E-2 | 3.032E-2 | |||||||||
| 0.89 | 4.856E-2 | 6.167E-2 | 0.871 | 0.129 | 4.249E-2 | 4.722E-2 | |||||||
| 2.765E-2 | 3.293E-2 | 2.422E-2 | 1.43E-2 | 2.036E-2 | |||||||||
| 3.53E-2 | 4.471E-2 | 0.214 | 0.786 | 0.888 | 5.379E-2 | 5.85E-2 | |||||||
| 1.673E-2 | 1.898E-2 | 9.715E-3 | 4.413E-3 | 8.04E-3 | |||||||||
| 2.016E-2 | 2.467E-2 | 2.473E-2 | 1.126E-2 | 1.852E-2 | |||||||||
| 4.18E-2 | 5.375E-2 | 0.445 | 0.555 | 0.843 | 8.328E-2 | 7.343E-2 | |||||||
| 6.909E-3 | 8.138E-3 | 3.826E-3 | 2.024E-3 | 4.461E-3 | |||||||||
| 2.177E-2 | 2.664E-2 | 1.737E-2 | 1.235E-2 | 2.006E-2 | |||||||||
| 3.313E-3 | 3.835E-3 | 7.777E-4 | 7.118E-4 | 1.772E-3 | |||||||||
| 8.015E-3 | 9.392E-3 | 2.538E-3 | 2.346E-3 | 5.213E-3 | |||||||||
| 9.517E-3 | 9.287E-3 | 1.672E-3 | 2.801E-4 | 1.144E-2 | |||||||||
| 0.622 | 5.949E-2 | 0.318 | 0.312 | 0.688 | 8.554E-3 | 0.534 | 0.454 | ||||||
| 2.91E-2 | 3.278E-2 | 2.378E-2 | 1.591E-2 | 2.411E-2 | |||||||||
| 1.627E-2 | 1.722E-2 | 6.856E-3 | 5.671E-3 | 1.028E-2 | |||||||||
| 5.689E-3 | 5.302E-3 | 7.406E-4 | 7.603E-4 | 1.839E-3 | |||||||||
| 3.907E-2 | 4.572E-2 | 4.787E-2 | 2.884E-2 | 3.511E-2 | |||||||||
| 1.663E-2 | 1.757E-2 | 6.997E-3 | 5.335E-3 | 8.978E-3 | |||||||||
| 7.372E-3 | 7.43E-3 | 6.712E-4 | 7.688E-4 | 1.837E-3 | |||||||||
| 1.696E-2 | 1.809E-2 | 7.417E-3 | 5.782E-3 | 9.748E-3 | |||||||||
Bold numbers indicate PPs greater than 0.90.