Literature DB >> 20698673

Free-energy surfaces for liquid-phase reactions and their use to study the border between concerted and nonconcerted alpha,beta-elimination reactions of esters and thioesters.

Yongho Kim1, Jerry R Mohrig, Donald G Truhlar.   

Abstract

Distinguishing between the concerted second-order mechanism for beta-eliminations and nonconcerted mechanisms with discrete carbanion intermediates is very difficult experimentally, but the ability of quantum chemistry to find stationary points of the free-energy surface in liquid-phase solutions, even for complex reagents, provides a new tool for elucidating such mechanisms. Here we use liquid-phase density functional theory calculations to find transition states and intermediates on the free-energy surfaces of four base-initiated alpha,beta-eliminations of acetoxy and mesyloxy esters and their analogous thioesters. The geometries, free energies, and charge distributions of these structures support a stepwise irreversible first-order elimination from a conjugate base (E1cB(I)) mechanism with acetoxy ester 3, acetoxy thioester 4, and mesyloxy thioester 6. However, mesyloxy ester 5, which has an excellent nucleofuge and a less-acidic proton, follows a concerted but asynchronous E2 mechanism with an E1cB-like transition state. The anti transition state is more favorable than the syn one, even for the poorer nucleofuge and more-acidic thioesters. The article includes a general scheme for describing liquid-phase reactions in terms of free-energy surfaces.

Entities:  

Year:  2010        PMID: 20698673     DOI: 10.1021/ja101104q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

Review 1.  Transition state theory for enzyme kinetics.

Authors:  Donald G Truhlar
Journal:  Arch Biochem Biophys       Date:  2015-05-23       Impact factor: 4.013

2.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

3.  Reactivity in the nucleophilic aromatic substitution reactions of pyridinium ions.

Authors:  Jeannette T Bowler; Freeman M Wong; Scott Gronert; James R Keeffe; Weiming Wu
Journal:  Org Biomol Chem       Date:  2014-08-28       Impact factor: 3.876

4.  Theoretical and Experimental Investigation of Thermodynamics and Kinetics of Thiol-Michael Addition Reactions: A Case Study of Reversible Fluorescent Probes for Glutathione Imaging in Single Cells.

Authors:  Jianwei Chen; Xiqian Jiang; Shaina Carroll; Jia Huang; Jin Wang
Journal:  Org Lett       Date:  2015-11-25       Impact factor: 6.005

5.  Concerted or stepwise: how much do free-energy landscapes tell us about the mechanisms of elimination reactions?

Authors:  Fernanda Duarte; Scott Gronert; Shina Caroline Lynn Kamerlin
Journal:  J Org Chem       Date:  2014-01-24       Impact factor: 4.354

6.  DFT studies of the conversion of four mesylate esters during reaction with ammonia.

Authors:  Andrzej Nowacki; Karol Sikora; Barbara Dmochowska; Andrzej Wiśniewski
Journal:  J Mol Model       Date:  2013-04-10       Impact factor: 1.810

7.  DFT studies of conversion of methyl chloride and three substituted chloromethyl tetrahydrofuran derivatives during reaction with trimethylamine.

Authors:  Dominik Walczak; Andrzej Nowacki
Journal:  J Mol Model       Date:  2013-08-06       Impact factor: 1.810

8.  Operando Modeling of Multicomponent Reactive Solutions in Homogeneous Catalysis: from Non-standard Free Energies to Reaction Network Control.

Authors:  Pavel O Kuliaev; Evgeny A Pidko
Journal:  ChemCatChem       Date:  2019-12-11       Impact factor: 5.686

  8 in total

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