Literature DB >> 20696902

Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects.

Cécile Hervé1, Artur Rogowski, Anthony W Blake, Susan E Marcus, Harry J Gilbert, J Paul Knox.   

Abstract

Cell wall degrading enzymes have a complex molecular architecture consisting of catalytic modules and noncatalytic carbohydrate-binding modules (CBMs). The function of CBMs in cell wall degrading processes is poorly understood. Here, we have evaluated the potential enzyme-targeting function of CBMs in the context of intact primary and secondary cell wall deconstruction. The capacity of a pectate lyase to degrade pectic homogalacturonan in primary cell walls was potentiated by cellulose-directed CBMs but not by xylan-directed CBMs. Conversely, the arabinofuranosidase-mediated removal of side chains from arabinoxylan in xylan-rich and cellulose-poor wheat grain endosperm cell walls was enhanced by a xylan-binding CBM but less so by a crystalline cellulose-specific module. The capacity of xylanases to degrade xylan in secondary cell walls was potentiated by both xylan- and cellulose-directed CBMs. These studies demonstrate that CBMs can potentiate the action of a cognate catalytic module toward polysaccharides in intact cell walls through the recognition of nonsubstrate polysaccharides. The targeting actions of CBMs therefore have strong proximity effects within cell wall structures, explaining why cellulose-directed CBMs are appended to many noncellulase cell wall hydrolases.

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Year:  2010        PMID: 20696902      PMCID: PMC2930570          DOI: 10.1073/pnas.1005732107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  The mechanisms by which family 10 glycoside hydrolases bind decorated substrates.

Authors:  Gavin Pell; Edward J Taylor; Tracey M Gloster; Johan P Turkenburg; Carlos M G A Fontes; Luis M A Ferreira; Tibor Nagy; Samantha J Clark; Gideon J Davies; Harry J Gilbert
Journal:  J Biol Chem       Date:  2003-12-10       Impact factor: 5.157

2.  Evidence for synergy between family 2b carbohydrate binding modules in Cellulomonas fimi xylanase 11A.

Authors:  D N Bolam; H Xie; P White; P J Simpson; S M Hancock; M P Williamson; H J Gilbert
Journal:  Biochemistry       Date:  2001-02-27       Impact factor: 3.162

3.  Co-operative binding of triplicate carbohydrate-binding modules from a thermophilic xylanase.

Authors:  Alisdair B Boraston; Bradley W McLean; Grace Chen; Anson Li; R Antony J Warren; Douglas G Kilburn
Journal:  Mol Microbiol       Date:  2002-01       Impact factor: 3.501

4.  Structure of a family 15 carbohydrate-binding module in complex with xylopentaose. Evidence that xylan binds in an approximate 3-fold helical conformation.

Authors:  L Szabo; S Jamal; H Xie; S J Charnock; D N Bolam; H J Gilbert; G J Davies
Journal:  J Biol Chem       Date:  2001-10-11       Impact factor: 5.157

5.  A new family of rhamnogalacturonan lyases contains an enzyme that binds to cellulose.

Authors:  V A McKie; J P Vincken; A G Voragen; L A van den Broek; E Stimson; H J Gilbert
Journal:  Biochem J       Date:  2001-04-01       Impact factor: 3.857

6.  Pectate lyase 10A from Pseudomonas cellulosa is a modular enzyme containing a family 2a carbohydrate-binding module.

Authors:  I E Brown; M H Mallen; S J Charnock; G J Davies; G W Black
Journal:  Biochem J       Date:  2001-04-01       Impact factor: 3.857

7.  The Pseudomonas cellulosa glycoside hydrolase family 51 arabinofuranosidase exhibits wide substrate specificity.

Authors:  M H Beylot; V A McKie; A G Voragen; C H Doeswijk-Voragen; H J Gilbert
Journal:  Biochem J       Date:  2001-09-15       Impact factor: 3.857

8.  Cellulose-binding domains promote hydrolysis of different sites on crystalline cellulose.

Authors:  G Carrard; A Koivula; H Söderlund; P Béguin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

9.  Essential role of the family-22 carbohydrate-binding modules for beta-1,3-1,4-glucanase activity of Clostridium stercorarium Xyn10B.

Authors:  Rie Araki; Mursheda K Ali; Makiko Sakka; Tetsuya Kimura; Kazuo Sakka; Kunio Ohmiya
Journal:  FEBS Lett       Date:  2004-03-12       Impact factor: 4.124

10.  The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation.

Authors:  Deborah Hogg; Gavin Pell; Paul Dupree; Florence Goubet; Susana M Martín-Orúe; Sylvie Armand; Harry J Gilbert
Journal:  Biochem J       Date:  2003-05-01       Impact factor: 3.857

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  94 in total

Review 1.  Bacterial expansins and related proteins from the world of microbes.

Authors:  Nikolaos Georgelis; Nikolas Nikolaidis; Daniel J Cosgrove
Journal:  Appl Microbiol Biotechnol       Date:  2015-04-02       Impact factor: 4.813

2.  Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose.

Authors:  Christina M Payne; Michael G Resch; Liqun Chen; Michael F Crowley; Michael E Himmel; Larry E Taylor; Mats Sandgren; Jerry Ståhlberg; Ingeborg Stals; Zhongping Tan; Gregg T Beckham
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

3.  Structure-function analysis of the bacterial expansin EXLX1.

Authors:  Nikolaos Georgelis; Akira Tabuchi; Nikolas Nikolaidis; Daniel J Cosgrove
Journal:  J Biol Chem       Date:  2011-03-24       Impact factor: 5.157

4.  Exploring Multimodularity in Plant Cell Wall Deconstruction: STRUCTURAL AND FUNCTIONAL ANALYSIS OF Xyn10C CONTAINING THE CBM22-1-CBM22-2 TANDEM.

Authors:  M Angela Sainz-Polo; Beatriz González; Margarita Menéndez; F I Javier Pastor; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2015-05-22       Impact factor: 5.157

5.  Novel characteristics of a carbohydrate-binding module 20 from hyperthermophilic bacterium.

Authors:  Il-Nam Oh; Jay-Lin Jane; Kan Wang; Jong-Tae Park; Kwan-Hwa Park
Journal:  Extremophiles       Date:  2015-01-10       Impact factor: 2.395

6.  Distinct roles for carbohydrate-binding modules of glycoside hydrolase 10 (GH10) and GH11 xylanases from Caldicellulosiruptor sp. strain F32 in thermostability and catalytic efficiency.

Authors:  Dong-Dong Meng; Yu Ying; Xiao-Hua Chen; Ming Lu; Kang Ning; Lu-Shan Wang; Fu-Li Li
Journal:  Appl Environ Microbiol       Date:  2015-01-09       Impact factor: 4.792

7.  Crystallization and preliminary X-ray diffraction analysis of the N-terminal domain of Paenibacillus barcinonensis xylanase 10C containing the CBM22-1-CBM22-2 tandem.

Authors:  María Ángela Sainz-Polo; Beatriz González; F I Javier Pastor; Julia Sanz-Aparicio
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-28       Impact factor: 1.056

8.  Molecular profiling of microbial community structure and their CAZymes via metagenomics, from Tsomgo lake in the Eastern Himalayas.

Authors:  Aditi Rai; Arindam Bhattacharjee
Journal:  Arch Microbiol       Date:  2021-04-04       Impact factor: 2.552

9.  De novo genome assembly and comparative annotation reveals metabolic versatility in cellulolytic bacteria from cropland and forest soils.

Authors:  Suman Yadav; Bhaskar Reddy; Suresh Kumar Dubey
Journal:  Funct Integr Genomics       Date:  2019-08-05       Impact factor: 3.410

10.  A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.

Authors:  Bruna Medeia Campos; Marcelo Vizona Liberato; Thabata Maria Alvarez; Letícia Maria Zanphorlin; Gabriela Cristina Ematsu; Hernane Barud; Igor Polikarpov; Roberto Ruller; Harry J Gilbert; Ana Carolina de Mattos Zeri; Fabio Marcio Squina
Journal:  J Biol Chem       Date:  2016-09-12       Impact factor: 5.157

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